PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G213800.1.p | ||||||||
Common Name | GLYMA_02G213800, LOC100816394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28063.6 Da PI: 8.3282 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.3 | 3.7e-15 | 47 | 94 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h e+ErrRR+riNs +++Lr+llP+a K +Ka+ L ++ve++k L Glyma.02G213800.1.p 47 CKSHREAERRRRQRINSHLSTLRTLLPNA-----AKSDKASLLGEVVEHVKRL 94 789*************************8.....7****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.929 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-12 | 47 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-14 | 48 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-14 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-12 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.47E-5 | 58 | 97 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.0E-6 | 146 | 211 | No hit | No description |
SuperFamily | SSF55021 | 2.52E-5 | 146 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MLPFRRFYGF ESWLDHDAGH AQSSLIKKAV ELDGARSKTE RKSTEACKSH REAERRRRQR 60 INSHLSTLRT LLPNAAKSDK ASLLGEVVEH VKRLRKQADD VTCGDSYSSR SGEPGSVRSE 120 AWPFPGECDE VTVSYCDGED GEPKRVKATV CCGDRTGLNR DVSQAIRSVR AKAVRAEMMT 180 VGGRTKSVVV VEWEKEEEEV GALERALKAV VENRALVGFG MGPVILGQKR GRDCCASPSS 240 EVDSDFLLRN GSFC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38170 | 0.0 | somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G213800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235187 | 0.0 | AC235187.1 Glycine max strain Williams 82 clone GM_WBb0010C08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518258.1 | 0.0 | transcription factor bHLH30 | ||||
Refseq | XP_028212989.1 | 0.0 | transcription factor bHLH30-like | ||||
TrEMBL | A0A445LRW8 | 0.0 | A0A445LRW8_GLYSO; Transcription factor AIG1 isoform A | ||||
TrEMBL | I1JGZ8 | 0.0 | I1JGZ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G37720.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11441 | 28 | 34 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 5e-29 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G213800.1.p |
Entrez Gene | 100816394 |