PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G185200.1.p
Common NameGLYMA_02G185200, LOC100795084
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 448aa    MW: 50165.1 Da    PI: 9.0595
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G185200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-1790149155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a+++++g
  Glyma.02G185200.1.p  90 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALRYWG 149
                          57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1390149IPR001471AP2/ERF domain
CDDcd000184.51E-1190159No hitNo description
SuperFamilySSF541712.55E-1790158IPR016177DNA-binding domain
SMARTSM003803.5E-2791163IPR001471AP2/ERF domain
PROSITE profilePS5103220.45591157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1691158IPR001471AP2/ERF domain
PRINTSPR003673.0E-692103IPR001471AP2/ERF domain
PRINTSPR003673.0E-6139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
METHPHYISK AFSLTNVRVR LGLVWFTSMA SSSSDPGKSE ADGSSETLSE ATAAAKDGQL  60
RMKKAKKERV CTAKERISKM PPCAVGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK  120
KGKQVYLGAY DDEEAAARAY DLAALRYWGP SALINFPVTD YARDLEEMQN VSREEYLASL  180
RRKSSGFSRG LSKYRGLSSR WNPTYGRMAG SDYFNSRYYG EDSAAETKYL SSFCIERKID  240
LTSYIKWWGS NKSQQPDSRV RFSDVRKHGF AGDFCIEHKT LEQNVHPSEP YQLLALGMPC  300
ERIKHEHSSV SALSIVLQSA AYKNLQQRAS TRQENSNYND ENENKDTIIN KLDHGKAAEK  360
SLNNDGGNER LDIAMGMSGS LPLQRNVYPP ASLLIAPLLT AYNTVDPSVD PVLWTPQVPI  420
LSAGLSGVAE VAKTETSSTY TIFQPDE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G185200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942140.0BT094214.1 Soybean clone JCVI-FLGm-24N23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519085.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-144AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLI1JGA60.0I1JGA6_SOYBN; Uncharacterized protein
STRINGGLYMA02G33090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-140AP2 family protein