PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G175700.1.p
Common NameGLYMA_02G175700, LOC100819605
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 379aa    MW: 41274 Da    PI: 8.5854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G175700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13306351655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Glyma.02G175700.1.p 306 SIAERVRRTRISERMRKLQELVPHM----DKQTNTADMLDLAVEYIKDLQ 351
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.831300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-16303365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-12304353No hitNo description
Gene3DG3DSA:4.10.280.107.0E-15305362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-10306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDSHIHHHQS YQQQNQPSSG LLRFRSAPSS LLSNLTPSFV SEDFGSSSFR ELEGNNNKGC  60
SKDLSSMNSH KGVYGGGLPP HYPRHGSSSS TSSSAMEGSY GMVSSMGLDH EAPHKGFGSS  120
LLRQSSSPAG LFSNNNISFQ NGFATMKGVG NYGAVNGSNG ELSPCINRLK NQVSFSPRNA  180
SSLGMLSQIS ELGSEDIEAT SPDDDTKHGG NDTQHYGPGF PFGSWNDTPQ LSENISGLKR  240
GRSGNEKMFS DVQNGELANQ VNMLSHHLSL PKTSAEMITM EKLLQFPDSV PCKIRAKRGC  300
ATHPRSIAER VRRTRISERM RKLQELVPHM DKQTNTADML DLAVEYIKDL QKQFKTLSEK  360
RANCKCISMP KADTNQIA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.76560.0cotyledon| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G175700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150419e-84AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519049.10.0transcription factor bHLH130
SwissprotQ66GR32e-89BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0B2R3640.0A0A0B2R364_GLYSO; Transcription factor bHLH130
TrEMBLI1JG310.0I1JG31_SOYBN; Uncharacterized protein
STRINGGLYMA02G29830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]