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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.02G173900.2.p |
Common Name | GLYMA_02G173900 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
C3H |
Protein Properties |
Length: 228aa MW: 23751.3 Da PI: 9.481 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.02G173900.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 28.9 | 2e-09 | 30 | 55 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt++C+ f Ck+Gd+C+FaHg+
Glyma.02G173900.2.p 30 KTRICNKFNTAEGCKFGDKCHFAHGE 55
8***********************96 PP
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2 | zf-CCCH | 36.2 | 1e-11 | 194 | 218 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +fa+ G C +G+rC+FaHg
Glyma.02G173900.2.p 194 FKTKLCENFAK-GSCTFGERCHFAHG 218
69*********.*************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 26 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 27 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-4 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 28 | 56 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.18E-15 | 90 | 170 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.9E-12 | 99 | 169 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.823 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 8.6E-17 | 100 | 168 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.33E-15 | 102 | 165 | No hit | No description |
Pfam | PF00013 | 2.9E-12 | 102 | 165 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-16 | 189 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-7 | 193 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.352 | 193 | 220 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-8 | 193 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 194 | 218 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MMNLKPAAPP PRTVAAPPPI PNGSAPSAVK TRICNKFNTA EGCKFGDKCH FAHGEWELGK 60 PIAPSIDDHH HHRPLGPPAG GRMAGRIEPP PAMAGSFGAI STAKISVEAS LAGAIIGKGG 120 VNSKQICRQT GAKLSIREHE SDPNLRNIEL EGTFEQIKEA SNMVKDLLLT VSMSAPPKST 180 PGVPGAPAPP GSNFKTKLCE NFAKGSCTFG ERCHFAHGAA ELRKSGV*
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