PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G173900.1.p
Common NameGLYMA_02G173900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 296aa    MW: 31059.6 Da    PI: 9.75
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G173900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.9e-0998123227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          kt++C+ f     Ck+Gd+C+FaHg+
  Glyma.02G173900.1.p  98 KTRICNKFNTAEGCKFGDKCHFAHGE 123
                          8***********************96 PP
2zf-CCCH35.71.4e-11262286126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +fa+ G C +G+rC+FaHg
  Glyma.02G173900.1.p 262 FKTKLCENFAK-GSCTFGERCHFAHG 286
                          69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423260IPR000571Zinc finger, CCCH-type
SMARTSM003564.83259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-63358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-73457IPR000571Zinc finger, CCCH-type
PfamPF146081.64057No hitNo description
Gene3DG3DSA:4.10.1000.102.2E-1494127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-895127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6196124IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-496123IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-698123IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.05E-15158238IPR004088K Homology domain, type 1
SMARTSM003223.9E-12167237IPR004087K Homology domain
PROSITE profilePS5008414.823168232IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.4E-16168236IPR004088K Homology domain, type 1
CDDcd001052.80E-15170233No hitNo description
PfamPF000134.6E-12170233IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.4E-16257292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.352261288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8261291IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7261287IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDVRKRGRPD VNLNGAVKKT KQELESLSSG VGSKSKPCTK FFSTAGCPFG EGCHFLHYVP  60
GGYNVVAHMM NLKPAAPPPR TVAAPPPIPN GSAPSAVKTR ICNKFNTAEG CKFGDKCHFA  120
HGEWELGKPI APSIDDHHHH RPLGPPAGGR MAGRIEPPPA MAGSFGAIST AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHESD PNLRNIELEG TFEQIKEASN MVKDLLLTVS  240
MSAPPKSTPG VPGAPAPPGS NFKTKLCENF AKGSCTFGER CHFAHGAAEL RKSGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.547810.0hypocotyl| leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G173900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943100.0BT094310.1 Soybean clone JCVI-FLGm-18B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209095.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A445LQ690.0A0A445LQ69_GLYSO; Zinc finger CCCH domain-containing protein 14 isoform A
TrEMBLI1JG210.0I1JG21_SOYBN; Uncharacterized protein
STRINGGLYMA02G29360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-64C3H family protein