PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 261aa MW: 29019.6 Da PI: 6.71

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G162600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97	1.3e-30	83	136	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Glyma.02G162600.3.p 83 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 136 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	80	139	IPR017930	Myb domain
SuperFamily	SSF46689	2.24E-20	80	140	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-31	82	141	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	84	136	IPR006447	Myb domain, plants
Pfam	PF00249	9.1E-8	86	135	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MREEDSNWFS SWEEELPPPE ELMPLSQTLI SHNLAIAFDI TNPSQQQQQQ QYSQQGQEQE 60 QQQQFPHQVP DNIDEEPART LKRPRLVWTP QLHKRFVDAV AHLGIKNAVP KTIMQLMSVD 120 GLTRENVASH LQKYRLYLKR MQGLSAGGGV GRVASADPTT DRLFASSPVP PHFLQRPGSD 180 HFLPLVSVPA LQQQQQRHHH QHLAVAASAA AGHRQFGLPP NGHFELPILS RMGAPVPGYA 240 AEDVESGGRK VLTLFPAGDE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	9e-33	83	139	1	57	Transcription factor LUX
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.38934	2e-56	cotyledon\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G162600.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	2e-65	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006575148.1	0.0	transcription factor MYBC1
Refseq	XP_028208269.1	0.0	transcription factor MYBC1-like
Swissprot	O22210	5e-56	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	I1JFQ0	0.0	I1JFQ0_SOYBN; Uncharacterized protein
STRING	GLYMA02G21820.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	3e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G162600.3.p
Entrez Gene	100816747

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]