PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 285aa MW: 32383 Da PI: 4.6704

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G161100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.8e-10	122	165	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + +k+ +r +NR AA rsR+RKk ++++Le k+ Le+e ++L Glyma.02G161100.1.p 122 PMSKKLKRQLRNRDAAVRSRERKKLYVKNLEMKSRYLEGECRRL 165 5689***********************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.6E-10	118	183	No hit	No description
SMART	SM00338	0.006	121	185	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.255	123	165	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-8	124	165	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.25E-10	125	181	No hit	No description
CDD	cd14704	6.70E-13	126	176	No hit	No description
PROSITE pattern	PS00036	0	128	143	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDELEETLLT QIDWESFLDD IPELNVDDFL QDDNAVPVVT DNHSSPNDDP VLSEIENMLM 60 TQAENDAVVL PETPSSEAGY YKLFEEILVE EPKEGPVSPP SKIESEEGSD KDKTDDAASD 120 EPMSKKLKRQ LRNRDAAVRS RERKKLYVKN LEMKSRYLEG ECRRLGHLLQ CCYAENNALR 180 LCLQLRGTYG ASMTMQESAV LLLEPLLLGS LLWCMGIICH LSLPLMLWVA AVLPRENIEQ 240 KGLRRVTQKG SESKISECFQ MQSFLKSRKS RASRTKMKFN FIVF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.20878	0.0	cotyledon\| epicotyl\| flower\| hypocotyl\| leaf\| pod\| root\| seed coat\| somatic embryo\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G161100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB823540	0.0	AB823540.1 Glycine max GmbZIP68u mRNA for transcription factor bZIP68 membrane type, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237044.1	0.0	bZIP transcription factor bZIP68
Refseq	XP_028208184.1	0.0	bZIP transcription factor 50
TrEMBL	A0A0B2S5C7	0.0	A0A0B2S5C7_GLYSO; BZIP transcription factor 50
TrEMBL	Q0GPH4	0.0	Q0GPH4_SOYBN; BZIP transcription factor bZIP68
STRING	GLYMA02G19754.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12009	30	32
Representative plant	OGRP5468	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	1e-16	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Glyma.02G161100.1.p
Entrez Gene	778132

Publications ? help Back to Top
Liao Y, et al. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta, 2008. 228(2): p. 225-40 [PMID:18365246]