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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.02G153600.1.p |
| Common Name | LOC100814096 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C3H |
| Protein Properties |
Length: 310aa MW: 33515.1 Da PI: 9.0447 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.02G153600.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 39.6 | 8.9e-13 | 16 | 42 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++ ++C +++rtG C yGdrC+F+H++
Glyma.02G153600.1.p 16 PGVPNCVYYMRTGVCGYGDRCRFNHPR 42
5789*********************96 PP
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| 2 | zf-CCCH | 41.3 | 2.6e-13 | 63 | 87 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+++++tGtCk+G++CkF+H++
Glyma.02G153600.1.p 63 EPPCQYYLKTGTCKFGASCKFHHPK 87
79*********************96 PP
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| 3 | zf-CCCH | 38 | 2.8e-12 | 109 | 133 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+++++tG+Ck+G +CkF+H++
Glyma.02G153600.1.p 109 EKECSYYLKTGQCKFGISCKFHHPQ 133
689********************97 PP
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| 4 | zf-CCCH | 35.7 | 1.4e-11 | 264 | 290 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C++++rtG Ck+G C+++H++
Glyma.02G153600.1.p 264 PGEPECQYYLRTGDCKFGLACRYHHPR 290
5799*********************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.2E-6 | 15 | 42 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.108 | 15 | 43 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-9 | 17 | 42 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.45E-7 | 19 | 44 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.5E-6 | 21 | 42 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.995 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-6 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-10 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-6 | 63 | 88 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.3E-6 | 65 | 86 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.4E-5 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.549 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-6 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-9 | 109 | 133 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 112 | 132 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.624 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.0E-5 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.7E-9 | 265 | 290 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-5 | 267 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MWHLTLGGVE SYPERPGVPN CVYYMRTGVC GYGDRCRFNH PRDRAAVAAA VRATGDYPER 60
VGEPPCQYYL KTGTCKFGAS CKFHHPKNGG GYLSQAPLNI YGYPLRLGEK ECSYYLKTGQ 120
CKFGISCKFH HPQPAGTSLP TSAPQFYQQV QSPTVPLPEQ YGGASTSLRV ARPPVLPGSY 180
VQGAYGPVLL SPGVVQFPGW SHYSAPVSPV LSPGTQPAVG ATSLYGVTQL SSPTSAFARP 240
YTPLSSTTGP SGSSLKDRFF PERPGEPECQ YYLRTGDCKF GLACRYHHPR DHIVAPLLSP 300
VGLPLRPVH*
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