PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G147800.1.p
Common NameGLYMA_02G147800, LOC100786815
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 654aa    MW: 73028.3 Da    PI: 5.3499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G147800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-14455501455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Glyma.02G147800.1.p 455 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 501
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-579191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19453517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11455500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-15455505No hitNo description
Gene3DG3DSA:4.10.280.105.4E-19455517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MTAPLDTGLQ SMLQAAVQSV HWTYSLFWQL CPQQVILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS VGETNPPTRR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HLWLTGANEV DSKTFSRAIL AKSARIQTVV CIPLLDGVVE FGTTDKVQED  180
LSFIQHVKTF FIDHLIPLRP KPALSEHSTS NPTSSDHIPT VMYTMVDPPA AKCNLNDDMD  240
EDIEEEEEEE EEDEVESGSE DETGDGIACQ TLRPSTVAEP SELMQLEMPE DIRLGSPNDG  300
SNNLDSDFHL LAVSQGGNEA RQAESTRRWS SSQEPMQVQL PTSALHPLED LTQEDTHYSQ  360
TVSNILQNQT TRWLASPSSI GYNTYSTHSA FAKWSSRASH HFHPAADGTS QWLLKYILFT  420
VPHLHAKNPG ESSPHTAADT KLRGKGTPQD ELSANHVLAE RRRREKLNER FIILRSLVPF  480
VTKMDKASIL GDTIEYVKQL RRKIQELEAR NRLTEERSKL PEVAVQRTSS SSSKEQQRSG  540
VTMMEKRKVR IVEGVAAKAK AVEVEATTSV QVSIIESDAL LEIECRHREG LLLDVMQMLR  600
EVRIEVIGVQ SSLNNGVFVA ELRAKVKEHA NGKKVSIVEV KRALNQIIPH AVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2291919192Transcription factor MYC3
4rqw_B2e-2291919192Transcription factor MYC3
4rru_A4e-22918748227Transcription factor MYC3
4rs9_A2e-2291919192Transcription factor MYC3
4ywc_A4e-22918748227Transcription factor MYC3
4ywc_B4e-22918748227Transcription factor MYC3
4yz6_A2e-2291919192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459464ERRRRE
2460465RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G147800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575074.10.0basic helix-loop-helix protein A
RefseqXP_028206637.10.0basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A445LP580.0A0A445LP58_GLYSO; Basic helix-loop-helix protein A isoform A
TrEMBLK7K8E70.0K7K8E7_SOYBN; Uncharacterized protein
STRINGGLYMA02G16670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-106bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]