PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 178aa MW: 19406.9 Da PI: 7.9105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G142800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	3e-10	124	168	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Glyma.02G142800.2.p 124 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 168 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-14	117	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	119	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-14	121	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-7	124	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	125	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MANHPSQAST DDFLDQILGL STFASADASP MMLQLNSGDA ATHLASFHAP PYQLGLSLDQ 60 GKGPFLTPED ASGSGKRFRD DAVDTRPNNV FDGQPMPTTV PTAPHLPAVR PRVRARRGQA 120 TDPHSIAERL RRERIAERIR ALQELVPSVN KTDRAAMLDE IVDYVKFLRL QVKVNAL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	133	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.44275	0.0	cotyledon

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G142800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	6e-34	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981292.1	1e-126	transcription factor UNE12
Swissprot	O22768	1e-62	UNE12_ARATH; Transcription factor UNE12
TrEMBL	K7K8B8	1e-125	K7K8B8_SOYBN; Uncharacterized protein
STRING	GLYMA02G16110.2	1e-123	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G142800.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]