PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G105900.2.p
Common NameGLYMA_02G105900, LOC100781296
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 425aa    MW: 44178.7 Da    PI: 6.9201
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G105900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.54e-41691962111
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                          ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++  
  Glyma.02G105900.2.p  69 PPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPsh 158
                          789******************************************************************999777777777775555544 PP

                  TCP  89 ...............kaaksaakskksqksaasalnla 111
                                         +aa++aa+ +++ + + s++ ++
  Glyma.02G105900.2.p 159 yfrgnyfnpstfstsAAAAAAAQLRSRAEWDRSMSMVM 196
                          44444444444443222222223333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.2E-4074217IPR005333Transcription factor, TCP
PROSITE profilePS5136927.68375129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MELEADHQNG IRSRLNFPLQ LLEKKDIDDV TEQPCSTTSV VTATTTAITT TTTSDNNDLH  60
LAEQSKKPPP KRSSTKDRHT KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLQ  120
QAEPAVIAAT GTGTIPANFT SLNISLRSSG STMSAPSHYF RGNYFNPSTF STSAAAAAAA  180
QLRSRAEWDR SMSMVMEDSR RSMLENTSSI SAILNFNPMG NVNVIQQAKQ ELREESGGGG  240
GLESVASDSD GSLGRKRRPE QELSQMGSYL IQSSTGSLPA SHASNTAAFW MVAGHGNQAM  300
SGGGSGGGGN NGSSDNNPIW AIPSVGNSGV YRGAMSAPGG IHFMNFASPM NLMPGGQLGS  360
GIVGGGGGGG GNGGAQLLSE SNLGMLAALN AYRQIPANGV SEPPGSAGQH HGGDDGRDST  420
SQHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.128400.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G105900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520071.10.0transcription factor TCP15
TrEMBLK7K7K60.0K7K7K6_SOYBN; Uncharacterized protein
STRINGGLYMA02G11781.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-46TCP family protein