PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G103200.1.p

Common Name

GLYMA_02G103200, LOC102665879

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 278aa MW: 31095.1 Da PI: 6.048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G103200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	80	127	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f+ L llP++ p K +K++++ +Av YIk+L+ Glyma.02G103200.1.p 80 MHIWTERERRKKMRNMFASLHALLPHL---P-SKADKSTVVDEAVAYIKNLE 127 56678*******************6...3.8**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.13E-11	74	131	No hit	No description
PROSITE profile	PS50888	13.751	76	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-15	76	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	79	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-9	81	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-8	84	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MTLLTVEDQS LHDMNFLWEN HSWDPSNSDN SGESKENMKS LDQVEEKDEA LMNKKRNRDQ 60 GNITSGEGKG EKCRESDHEM HIWTERERRK KMRNMFASLH ALLPHLPSKA DKSTVVDEAV 120 AYIKNLEKTL EKLEKQKQER VQCVSTFGCE PSMFVTGQGS SNNNISNAII GTTSNALSFP 180 VAFDKTWASA NLVLNIFGDE AQFSICTAHK PGLMTTIGFV LEKYKIEVIT ANISCIGYGN 240 ACMIQAHGKR VSHQFLDANS VEEIYKQAAG EIMLWIG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G103200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574890.1	0.0	transcription factor bHLH95
TrEMBL	K7K7J0	0.0	K7K7J0_SOYBN; Uncharacterized protein
STRING	GLYMA02G11500.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4773	33	58
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	4e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G103200.1.p
Entrez Gene	102665879