PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.02G087200.1.p | ||||||||
Common Name | GLYMA_02G087200, LOC100820321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 227aa MW: 25696.9 Da PI: 4.7251 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 108.4 | 4.5e-34 | 1 | 89 | 8 | 96 |
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +Pi+nv++i ++lP+nakis da +++q+ ++++i fvt +a ++cq e rk +n++dllwa+ +lGf+dyvepl++++++yr++eg Glyma.02G087200.1.p 1 MPITNVTKITGQILPNNAKISYDAMDMIQQGATKYINFVTRKAKEQCQSEYRKIMNAEDLLWAMKKLGFNDYVEPLTAFVQRYRNIEGS 89 8*************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.77E-23 | 1 | 106 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.3E-30 | 1 | 91 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-14 | 1 | 64 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.8E-11 | 28 | 46 | No hit | No description |
PRINTS | PR00615 | 5.8E-11 | 47 | 65 | No hit | No description |
PRINTS | PR00615 | 5.8E-11 | 66 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MPITNVTKIT GQILPNNAKI SYDAMDMIQQ GATKYINFVT RKAKEQCQSE YRKIMNAEDL 60 LWAMKKLGFN DYVEPLTAFV QRYRNIEGSD LFTSHKEPIP HIENNEPRPN PMPTLEILHS 120 PVPPPVHSSK PYFSIDTSHR ELIPHTENNG PSLGLEPNHM PTFEMTPLSP SVHPFESYFS 180 IDPDTNLEIL DPNDINEIYL DEFGVGCSND AFNNVDVSAL FKHDQP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-29 | 1 | 84 | 13 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.02G087200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628426.1 | 1e-168 | nuclear transcription factor Y subunit beta | ||||
TrEMBL | A0A0R0KTG7 | 1e-167 | A0A0R0KTG7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G29695.1 | 1e-66 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 8e-32 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.02G087200.1.p |
Entrez Gene | 100820321 |