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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G073900.4.p | ||||||||
Common Name | GLYMA_02G073900, LOC100792644 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 242aa MW: 26124.5 Da PI: 9.838 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.9 | 1.2e-17 | 147 | 180 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Glyma.02G073900.4.p 147 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 180 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.543 | 141 | 177 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.1E-17 | 141 | 191 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.8E-15 | 145 | 178 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.7E-15 | 145 | 204 | No hit | No description |
CDD | cd00202 | 9.78E-13 | 146 | 193 | No hit | No description |
Pfam | PF00320 | 2.6E-15 | 147 | 180 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 147 | 172 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MKKEEEPQCT TTTKEDIAHA QFQTASPVSV LESSSFCSGE KAASRGPEIY IPVPCGRVRS 60 KRPRPATFNP HPVMQLISPA SSTGENVQHN ATTTSKAASS DSENFAESVI KGPKQASGEH 120 KNKRKIKVTF SSGQEQQNAP SQAVRKCLHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR 180 LFPEYRPAAS PTFCAAVHSN SHKKVIEMRN KTGTKSGFAT DSAASPELIP NTNNSLTLEY 240 M* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 64 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26744 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G073900.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519961.2 | 1e-178 | GATA transcription factor 8 isoform X1 | ||||
Refseq | XP_006574762.1 | 1e-179 | GATA transcription factor 8 isoform X2 | ||||
Refseq | XP_006574763.1 | 1e-179 | GATA transcription factor 8 isoform X2 | ||||
Refseq | XP_028199233.1 | 1e-178 | GATA transcription factor 8-like isoform X1 | ||||
Refseq | XP_028199239.1 | 1e-179 | GATA transcription factor 8-like isoform X2 | ||||
Refseq | XP_028199247.1 | 1e-179 | GATA transcription factor 8-like isoform X2 | ||||
TrEMBL | A0A0R0KTZ8 | 1e-176 | A0A0R0KTZ8_SOYBN; GATA transcription factor | ||||
TrEMBL | A0A445LKN1 | 1e-176 | A0A445LKN1_GLYSO; GATA transcription factor | ||||
TrEMBL | A0A445LKP3 | 1e-178 | A0A445LKP3_GLYSO; GATA transcription factor | ||||
TrEMBL | K7K6X9 | 1e-178 | K7K6X9_SOYBN; GATA transcription factor | ||||
TrEMBL | K7K6Y1 | 1e-178 | K7K6Y1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G08145.2 | 1e-178 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-43 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G073900.4.p |
Entrez Gene | 100792644 |