PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G025500.2.p
Common NameGLYMA_02G025500, LOC100782014
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 238aa    MW: 25635.2 Da    PI: 6.5197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G025500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.4e-07143169430
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                          +h+ +Er RR++i +++ +L++l+P +
  Glyma.02G025500.2.p 143 SHSLAERARREKISERMKTLQDLVPGC 169
                          8************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.92E-6137178No hitNo description
SuperFamilySSF474591.83E-8137171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.508139200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-9142175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-5143169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDPAAIMNGA ANTTSFHLSE IWQFPPPNSP DALGLRRPHF AHGSFADFAP GPTRDADPAS  60
IAHKKPRHAA GEEEESAKGA STTNAVDEGG GGDGKRIKAS ESGEGGRENS SGKPAEQSGK  120
PPSEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK TLQDLVPGCN KFLSMKLEAV  180
NSRMESGIEV FPPKDFDQQT FDTTDMPFAS QATREYSRGS SSEWLHMQVG GGFERAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268930.0hypocotyl| seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G025500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466841e-41BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574570.11e-175transcription factor BHLH094 isoform X2
RefseqXP_028193973.11e-175transcription factor BHLH094-like isoform X2
SwissprotQ69WS38e-54BH094_ORYSJ; Transcription factor BHLH094
TrEMBLK7K6281e-174K7K628_SOYBN; Uncharacterized protein
STRINGGLYMA02G02942.11e-170(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-57BIG PETAL P