PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 346aa MW: 39145.3 Da PI: 4.3928

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G022300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.7e-19	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k Glyma.02G022300.1.p 86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 139 56689***********************************************98 PP
2	HD-ZIP_I/II	131.3	3.7e-42	86	177	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk++ e+L +e+++L++e+ Glyma.02G022300.1.p 86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKSDYESLVQENDKLKAEV 175 9**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Glyma.02G022300.1.p 176 NS 177 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.05E-19	77	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.378	81	141	IPR001356	Homeobox domain
SMART	SM00389	1.5E-17	83	145	IPR001356	Homeobox domain
CDD	cd00086	2.89E-17	84	142	No hit	No description
Pfam	PF00046	2.7E-16	86	139	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.5E-20	88	148	IPR009057	Homeodomain-like
PRINTS	PR00031	5.5E-6	112	121	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	116	139	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.5E-6	121	137	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.6E-19	141	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MASGKLYAGS NMSLLLQNER LPCSSEVLES LWAQTSNPAS FQGSKPVVDF ENVSGSRMTD 60 RPFFQALEKE ENCDEDYEGC FHQPGKKRRL TSEQVQFLER NFEVENKLEP ERKVQLAKEL 120 GLQPRQVAIW FQNRRARFKT KQLEKDYGVL KASYDRLKSD YESLVQENDK LKAEVNSLES 180 KLILRDKEKE ENSDDKSSPD DAVNSSSPHN NKEPMDLLII SKNATTTTTS ENGTKVLSPL 240 PLPIMVTCCK QEDANSAKSD VLDSDSPHCT SFVEPADSSH AFEPEDHSED FSQDEEDNLS 300 ENLLMTFPSS CCLPKVEEHC YDGPPENSCN FGFQVEDQTF CFWPY*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MASGKLYAGS NMSLLLQNER LPCSSEVLES LWAQTSNPAS FQGSKPVVDF ENVSGSRMTD  60
RPFFQALEKE ENCDEDYEGC FHQPGKKRRL TSEQVQFLER NFEVENKLEP ERKVQLAKEL  120
GLQPRQVAIW FQNRRARFKT KQLEKDYGVL KASYDRLKSD YESLVQENDK LKAEVNSLES  180
KLILRDKEKE ENSDDKSSPD DAVNSSSPHN NKEPMDLLII SKNATTTTTS ENGTKVLSPL  240
PLPIMVTCCK QEDANSAKSD VLDSDSPHCT SFVEPADSSH AFEPEDHSED FSQDEEDNLS  300
ENLLMTFPSS CCLPKVEEHC YDGPPENSCN FGFQVEDQTF CFWPY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARFKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22870	0.0	cotyledon\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G022300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094197	0.0	BT094197.1 Soybean clone JCVI-FLGm-24N17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574472.1	0.0	homeodomain-leucine zipper protein 57 isoform X1
Refseq	XP_028193699.1	0.0	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A0B2R516	0.0	A0A0B2R516_GLYSO; Homeobox-leucine zipper protein HAT5
TrEMBL	I1JBR7	0.0	I1JBR7_SOYBN; Uncharacterized protein
STRING	GLYMA02G02630.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-46	homeobox 1

Link Out ? help Back to Top
Phytozome	Glyma.02G022300.1.p
Entrez Gene	547565

Publications ? help Back to Top
Tang Z,Sadka A,Morishige DT,Mullet JE Homeodomain leucine zipper proteins bind to the phosphate response domain of the soybean VspB tripartite promoter. Plant Physiol., 2001. 125(2): p. 797-809 [PMID:11161037]