PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G019100.1.p

Common Name

GLYMA_02G019100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 296aa MW: 33680.6 Da PI: 6.6483

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G019100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.5e-18	88	141	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Glyma.02G019100.1.p 88 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 141 456899***********************************************9 PP
2	HD-ZIP_I/II	132.3	1.8e-42	87	177	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+y+a+k++n++L++++++L++e Glyma.02G019100.1.p 87 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAE 176 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Glyma.02G019100.1.p 177 I 177 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-19	79	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.394	83	143	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	86	147	IPR001356	Homeobox domain
CDD	cd00086	9.11E-16	88	144	No hit	No description
Pfam	PF00046	1.7E-15	88	141	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-19	90	150	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-5	114	123	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	118	141	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	123	139	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-16	143	183	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MWHKTCNEMA FFPANFMLQT PHHDDHHHHQ PPPSLTSILP TCAPQEYHGG VTILGKRSMS 60 FSSGIEHGEE ANNAEEDLSD DGSQAGEKKR RLNMEQVKTL EKSFELGNKL EPERKMQLAR 120 ALGLQPRQIA IWFQNRRARW KTKQLEKDYD VLKRQYEAVK SDNDALQAQN QKLQAEILAL 180 KSREPTESIN LNKETEGSCS NRSENSSDIK LDISRTPAID SPHSTHQQQP SRPFFPPSSV 240 RPAGVAQLFQ TSSRPELASC QKIDQMVKEE SLSNMFCGMD DQSGFWPWLE QQHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55995	0.0	cotyledon\| hypocotyl\| leaf\| pod\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G019100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098824	0.0	BT098824.1 Soybean clone JCVI-FLGm-13G9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028193307.1	0.0	homeobox-leucine zipper protein ATHB-13-like isoform X1
Swissprot	Q8LC03	1e-121	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A445LIE1	0.0	A0A445LIE1_GLYSO; Homeobox-leucine zipper protein ATHB-13 isoform B
TrEMBL	I1JBM6	0.0	I1JBM6_SOYBN; Uncharacterized protein
STRING	GLYMA02G02290.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1271	33	106
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-112	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G019100.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]