PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G228200.1.p
Common NameGLYMA_01G228200, LOC100792788
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 936aa    MW: 103025 Da    PI: 4.6322
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G228200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09782826146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+W+++E el+++av+++G++ ++ I + +  ++++ q+k+++ +
  Glyma.01G228200.1.p 782 RGKWSKQETELFYEAVREMGTD-FSMIQEIFFPNKSRHQIKLKYKN 826
                          89********************.*****98877***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159635.6E-23775846No hitNo description
PROSITE profilePS500906.481777828IPR017877Myb-like domain
SMARTSM007172.7E-9781830IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-7782826IPR009057Homeodomain-like
SuperFamilySSF466895.38E-11783832IPR009057Homeodomain-like
CDDcd001679.61E-7784826No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MDPFDDILPV APTARTRPGA KFIPKAKSKQ LPRKEIPVSE HATSSKDGIL GNECQNAVAS  60
AEESKGFIHH TQVEIPNSGD STNSKQASVK GDTAALVDDS TITASEVDAN QNSINFLKPA  120
CEVTEGDPVD FEGVNNGTTQ PVHHANAVEN ELNNVAAPSP TCSTIDRMKE QPKNGEDSFL  180
DSNKCLELID NSILVGMDLG FKSSSDDKIA IIQSNFDLKS NFCKKQEGVS AEFELDPFSN  240
ILPNPVARNV HKFKPKIKPR PRAGNVPAIA SDSSNVRMEK SVELPTSCTN NFQSFLSCGD  300
GSGGVNQSTS LPLPTSEILR TTELPKKFDD SSSSIPFSED NKSLAAAIPS QLDSPNVMLS  360
EDAVHNGTTD WSSSFRKSPG EAADIFSGLE SLHDFITQAA TGTGKPALHS FNGKSGEENF  420
VTPASSSINS FGECDITQAQ RCPEYHTPQD SLTFNEAAVL NEDNTHSSNR RSETEEIVDL  480
NPACAGDDVI DYQFMKSGKD PTGIPVHEEL TNAADSPTLA DFLHADVTRE KEDSNKRKND  540
GSTSCSLRKK RRFIAGEEDK GAKTSRQLRK QAAHKPANSS FNEDVEDNND LDPPYNSNGD  600
ELQENDDDYE VNYPSRKKRV SKSSQKKSMA KSGKTSQKPK KAYEDLEKTE EPLKKFSHST  660
RRKKRCVDKA LLEIPEDELD RLRIPIKDII LLEEHRERLA KKEAMTSNIS STNQSGGDSL  720
HEAGAYNEGA YNEGAYDDGA YNDGEFLGSE DGRDPYDDQA NEGIASTSVL LNYQSFREKT  780
PRGKWSKQET ELFYEAVREM GTDFSMIQEI FFPNKSRHQI KLKYKNEERQ QPLQLTDAVN  840
NRAKDHPHSK LFIERLQLAS AKAEDPCRDA SDFVMAEEVV DLTAGTNEEV AEVATTKEDA  900
DVKEQEDSVA VPSPEQSDDS EDDFQRWSQY KSGYQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1535551KRKNDGSTSCSLRKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.357800.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G228200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914155e-38BT091415.1 Soybean clone JCVI-FLGm-7N10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516729.10.0uncharacterized protein LOC100792788 isoform X1
RefseqXP_028248487.10.0uncharacterized protein LOC114425731 isoform X1
TrEMBLA0A445M7320.0A0A445M732_GLYSO; Uncharacterized protein
TrEMBLK7K5C70.0K7K5C7_SOYBN; Uncharacterized protein
STRINGGLYMA01G43821.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Representative plantOGRP8075913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-37MYB_related family protein