PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G209100.1.p | ||||||||
Common Name | GLYMA_01G209100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 299aa MW: 33204.9 Da PI: 6.1864 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++Fs+ L H++ H Glyma.01G209100.1.p 4 YKCKLCSRTFSNGRALGGHMKAH 26 9*******************998 PP | |||||||
2 | zf-C2H2 | 14.8 | 8.4e-05 | 204 | 226 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+++ L +H + + Glyma.01G209100.1.p 204 HQCQSCGKTFRSSRALGSHRSIC 226 79*****************9876 PP | |||||||
3 | zf-C2H2 | 12.4 | 0.00048 | 236 | 258 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F + L H r+H Glyma.01G209100.1.p 236 FQCPFCSKVFGSGQALGGHKRSH 258 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.2E-8 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.88E-5 | 3 | 29 | No hit | No description |
PROSITE profile | PS50157 | 11.697 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0084 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 46 | 204 | 224 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.9E-4 | 204 | 223 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.69E-8 | 204 | 258 | No hit | No description |
PROSITE profile | PS50157 | 9.182 | 204 | 233 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 236 | 258 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.1E-11 | 236 | 258 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.076 | 236 | 263 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 238 | 258 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MERYKCKLCS RTFSNGRALG GHMKAHLATL PLPPQNQQPP LSPSAAASFS SNSSSEQEQA 60 THDEKSLIYG LRENPKKCFR LADPEFDTGS VVQDRESETE SKNPTRRRSK RTRRPVNLEQ 120 KKPKLSFMES PEPVSSVSDT SPEEDVAMCL MMLSRDRWSK NNNINVVNVN DEDVVEEEEE 180 EEEEEEEGGR SVLEIKLRRV RGKHQCQSCG KTFRSSRALG SHRSICEGSG NDSKIFQCPF 240 CSKVFGSGQA LGGHKRSHLM PSSSTTANND SVRLKESFID LNLPAPPEDD DLSVVSDA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37618 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G209100.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC967123 | 0.0 | KC967123.1 Glycine max C2H2-type zinc finger protein 1 (ZFP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304367.2 | 0.0 | C2H2-type zinc finger protein 1 | ||||
TrEMBL | I1J9V7 | 0.0 | I1J9V7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G41780.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-31 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G209100.1.p |