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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.01G199200.1.p |
| Common Name | GLYMA_01G199200, LOC100788563 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
LSD |
| Protein Properties |
Length: 148aa MW: 15344.9 Da PI: 8.0696 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.01G199200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 42.2 | 1.3e-13 | 30 | 54 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL YP GA+sV+Ca+C++V
Glyma.01G199200.1.p 30 CSGCRNLLLYPVGATSVCCAVCNAV 54
************************9 PP
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| 2 | zf-LSD1 | 44.8 | 2.1e-14 | 69 | 93 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+t L+Y rGA+sV+C++C+tV
Glyma.01G199200.1.p 69 CGGCHTFLMYIRGATSVQCSCCHTV 93
************************9 PP
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| 3 | zf-LSD1 | 34.6 | 3.2e-11 | 107 | 131 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C+ lL+Y +GA+sV+Ca+C +V
Glyma.01G199200.1.p 107 CGNCKMLLRYQYGARSVKCAVCSFV 131
**********************988 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
| Sequence ? help Back to Top |
| Protein Sequence Length: 148 aa
Download sequence Send
to blast |
MLVPLAPYPP PPPPAPYTPP PNGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTTVPPP 60
GTEMAQLVCG GCHTFLMYIR GATSVQCSCC HTVNLALEAN LVAHVNCGNC KMLLRYQYGA 120
RSVKCAVCSF VTSVGASTST TEQKFST*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT136945 | 1e-144 | BT136945.1 Lotus japonicus clone JCVI-FLLj-13N7 unknown mRNA. |
