PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G195900.1.p | ||||||||
Common Name | GLYMA_01G195900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 616aa MW: 69425.4 Da PI: 7.5703 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.8e-16 | 274 | 333 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g k ++++lg ++ +e+Aa+a++ a++k++g Glyma.01G195900.1.p 274 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqgrKGRQVYLGGYDMEEKAARAYDMAALKYWG 333 78*******************988885566555*************************98 PP | |||||||
2 | AP2 | 37.4 | 6.3e-12 | 378 | 430 | 3 | 55 |
AP2 3 ykGV...rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV ++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.01G195900.1.p 378 YRGVtrsQRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 430 999988767888999****988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-12 | 274 | 333 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-21 | 274 | 341 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-16 | 274 | 343 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.243 | 275 | 341 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-28 | 275 | 347 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-16 | 275 | 342 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 276 | 287 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.92E-23 | 376 | 440 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-15 | 376 | 439 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-30 | 377 | 444 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-17 | 377 | 438 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.94 | 377 | 438 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-6 | 378 | 430 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 420 | 440 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MKPIENGNTV SINYQNSWLG FSLSPQMNIG VPSHLHQTQP SSAAVEAVPP NFYHHTPLHN 60 YGLYYELEGE HVGMSSSLPI MPLKSNASLS GIEALSRSQA QATTTISAMH SSLNSMLINE 120 LLCHGLNNPN NLNHVQEDIS QQQFSYYSTL RNQDVILEGS KHQLPCIAED ENPGLKSWFS 180 RDFHARHAEE SRMIVPLECN GGESGSIGSI TYGDLHSSNL SVSPTSGSSS VTSSPALTNT 240 VATNTKKRWL EMVDQNQKQI VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE 300 GQGRKGRQVY LGGYDMEEKA ARAYDMAALK YWGPSSHINF PLENYQNELE EMKNMTRQEY 360 VAHLRRKSSG FSRGASMYRG VTRSQRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA 420 YDIAAIKFRG VNAVTNFDIT RYDVEKIMES NNLLSSEQAK RKREMDDGTR SEATVNQKPS 480 TYDHTQETIL MQKRCKNQSE WKMVQFPCPQ QLDQNQRIES CRTQPFSTDL DNMFRHQVEE 540 RSNMGTHLSN PSSLVTSLSS SREESPDKTS MPMLFGMPST VSKLLANVDS WDLSSNLRTA 600 LSMPQMPIFA AWTDA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7488 | 0.0 | epicotyl |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G195900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014631851.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Swissprot | Q84Z02 | 1e-137 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | K7K4R6 | 0.0 | K7K4R6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G40380.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-126 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G195900.1.p |
Publications ? help Back to Top | |||
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