PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G162600.1.p
Common NameGLYMA_01G162600, LOC102660533
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 122aa    MW: 13783.5 Da    PI: 8.7745
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G162600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like56.36.9e-1882120342
              G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 
                          +l+Wt +LH+rFv++v++L G+++A+Pkti++lm+v+gL+
  Glyma.01G162600.1.p  82 QLVWTLQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLS 120
                          689****************.*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.36E-777120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-1579120IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1182120IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSLEPHRIVL NVKRGSCNTL STIRSDRTMQ HAFFSNNNNN QHYNGDGDVN DKEDNDDTDC  60
KDSRSDSRTE TSAKRTTVKR LQLVWTLQLH KRFVDVVAHL GIKNAVPKTI MQLMNVEGLS  120
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-2080120141Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.603302e-51leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G162600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574285.16e-86transcription factor LUX
RefseqXP_028211013.16e-86transcription factor LUX-like
TrEMBLA0A445M3Y01e-84A0A445M3Y0_GLYSO; Transcription factor BOA
TrEMBLI1J8G81e-84I1J8G8_SOYBN; Uncharacterized protein
STRINGGLYMA01G36730.12e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-23G2-like family protein