PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G088200.1.p | ||||||||
Common Name | GLYMA_01G088200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 452aa MW: 50919.9 Da PI: 4.719 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.9 | 4.2e-32 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....t 78 lp+G++F+P+d+e++++ L+k g++ ++++ + evd i++++P++Lp vk++ + +fF+++ ++y+tg+rk+r+ Glyma.01G088200.1.p 58 LPKGVKFDPSDQEIIWHLLAKVGVGDSkphpfIDEFITTLEVDdgICYTHPQNLP-GVKQDGSASHFFHRAINAYNTGTRKRRKilgqdF 146 799************888877755444576554444444444345**********.677888999******************7455554 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g ++g+kk++v+y + r ++ekt+Wvmh+y+l Glyma.01G088200.1.p 147 GDVRWHKTGRTKPVVF-NGIQKGCKKIMVLYvsNVRGGRAEKTNWVMHQYHL 197 4889************.99************7666888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-37 | 44 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.579 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-13 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MAGTSWLVDK SRIATKIKCA SGACDPGKVI WKSNPTKPCP NCQHAIDNDD VAQEWPGLPK 60 GVKFDPSDQE IIWHLLAKVG VGDSKPHPFI DEFITTLEVD DGICYTHPQN LPGVKQDGSA 120 SHFFHRAINA YNTGTRKRRK ILGQDFGDVR WHKTGRTKPV VFNGIQKGCK KIMVLYVSNV 180 RGGRAEKTNW VMHQYHLGTE EDEKDGEYII SKVFYQQQQV KLGDKDDKDV PEATEINEST 240 IVKVDPVTPK FVTPETPCNE RWCADLDLGQ ETHNSPQLPQ MDCLDEIQAD YQDLANESSM 300 VETQHNEGMD DKEKNTEEGQ KWWDSESQNL LDSQQLVEAL SLCDDLLQSQ SPSRDGKHED 360 HKNQPGLSVY AQLGPENLKK DIEECQNLAL DKANIENDTP SEFRLSQLFS CFIGIWFTGQ 420 LYFLGLWQGS ELIWFFTSAG QADVFVTTFC C* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.60789 | 0.0 | cotyledon |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G088200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094476 | 0.0 | BT094476.1 Soybean clone JCVI-FLGm-18P19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518010.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Refseq | XP_028234162.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 1e-161 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0R0LFP2 | 0.0 | A0A0R0LFP2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G22510.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 | Representative plant | OGRP8264 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-154 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G088200.1.p |