PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G049600.1.p
Common NameGLYMA_01G049600, LOC100776292
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 466aa    MW: 51619.9 Da    PI: 6.9707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G049600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-16137182147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Glyma.01G049600.1.p 137 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 182
                          899*****************************.***********996 PP
2Myb_DNA-binding55.41.4e-17189232146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Glyma.01G049600.1.p 189 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 232
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17132183IPR017930Myb domain
SMARTSM007172.9E-14136185IPR001005SANT/Myb domain
PfamPF002499.9E-16137182IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-28137230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-25138190IPR009057Homeodomain-like
CDDcd001673.82E-13140181No hitNo description
PROSITE profilePS5129426.929184238IPR017930Myb domain
SMARTSM007171.8E-14188236IPR001005SANT/Myb domain
PfamPF002492.8E-14189231IPR001005SANT/Myb domain
CDDcd001671.15E-11191231No hitNo description
Gene3DG3DSA:1.10.10.601.8E-20191237IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MASSKCCMIS PQQNQNAPTC YPSPIGVVFA DMMGSLSLAT VSNNASSSQE SNVYGYGYGY  60
ASGVGNGSTR WSFPFMREFL SSNFEDCSDL VGAGESNNSN EKTNHNNGKF SEEESNPNEN  120
HANGKEVDSG HSKLCARGHW RPAEDSKLKE LVALYGPQNW NLIAEKLEGR SGKSCRLRWF  180
NQLDPRINRR AFSEEEEERL MQAHRIYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE  240
QSSAYRRRRM SQSVHRRVEQ NPTFVCSSSR DNASTTEQEP EPSPSYYPNL IHHGVALTNN  300
MASFPPFHGV AACNGVVVEF GSNGSPQNMT SGREAMPNTT HVGLSAQAQQ QAPFDFFSGG  360
GSNDIVLESI SHMRSRERTN GSHNHHCQLS GCYPHYPQQY LMAMQQQLDN NNNFYSFLNS  420
SPAASTAREP SSSPCVAEIR DKVENSDPPD GVPPPFFDFL GVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-341372377107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G049600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573117.10.0uncharacterized protein LOC100776292
RefseqXP_028230876.10.0uncharacterized protein LOC114411371
TrEMBLA0A445LZ180.0A0A445LZ18_GLYSO; Transcription factor MYB105
TrEMBLK7K1V80.0K7K1V8_SOYBN; Uncharacterized protein
STRINGGLYMA01G05980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-75myb domain protein 105