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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G036600.1.p | ||||||||
Common Name | GLYMA_01G036600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 242aa MW: 27314.9 Da PI: 7.5948 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00021 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Glyma.01G036600.1.p 77 FECQYCYKEFANSQALGGHQNAH 99 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 72 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.22E-6 | 73 | 104 | No hit | No description |
PROSITE profile | PS50157 | 11.51 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.8E-6 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEKDIIHLSP TWDGDNGNST EKRLRLFGFE LNPSKDGYAK ESGEGDESVN SSNSVSSGGD 60 KTVQEKPSAK DSDERKFECQ YCYKEFANSQ ALGGHQNAHK KERMKKKRLQ LQSINRYLQH 120 PFQSKHGFAH PSDTPWFYDP STYNNSEFTL SEEPQISFNS NVLDANFSCD QKSSWYSLAS 180 HPSNSQQDTC MFTFSNASNN SPFIFKPCHF PASNQSHKSK ALDLQLGLNL QSNTRSSLRR 240 M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G036600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091814 | 0.0 | BT091814.1 Soybean clone JCVI-FLGm-8L2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237195.2 | 0.0 | C2H2-type zinc finger domain-containing protein | ||||
Refseq | XP_028230079.1 | 0.0 | zinc finger protein 5-like | ||||
TrEMBL | A0A445LYH8 | 1e-179 | A0A445LYH8_GLYSO; Zinc finger protein GIS3 | ||||
TrEMBL | I1J5E7 | 1e-179 | I1J5E7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G04310.1 | 1e-180 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9594 | 26 | 35 | Representative plant | OGRP10209 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 8e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G036600.1.p |