PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G021100.1.p
Common NameGLYMA_01G021100, LOC100780729
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 338aa    MW: 36377 Da    PI: 8.8839
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G021100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.58.3e-403494262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  Glyma.01G021100.1.p 34 QEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVK 94
                         57899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.3E-333692IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-263792IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSPDDTPPPK PATAKDQETQ SSGGGRKSSS TRPQEQGLKC PRCDSPNTKF CYYNNYSLTQ  60
PRHFCKTCRR YWTKGGALRN VPIGGGCRKN KKVKSSRLSC DSKDSGSSSS ELGGLKFLHS  120
LSPSMDFHLG GLPFPRLHHH HPPTPYNHFS SFGDTSSASS CFNLDPSPGT TPSSSFAALN  180
NYPFSYNGAI QGMSSLNVHS GLASSIESLS SINQDLHWKL QQQRLAMLFG GDNNNQKDHS  240
GVNQIENLAQ KPQPIMFQNL EISKPGTFPV GNSRKEQGSS GDTHTPSTEW FFGNSYASVT  300
PTPTTSSGGP GNDNASNWSS GGVHAWGDVP QQYSALP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G021100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517274.10.0dof zinc finger protein DOF5.7
RefseqXP_028228272.10.0dof zinc finger protein DOF5.7-like
TrEMBLA0A0B2PBC70.0A0A0B2PBC7_GLYSO; Dof zinc finger protein DOF5.7
TrEMBLK7K1C70.0K7K1C7_SOYBN; Uncharacterized protein
STRINGGLYMA01G02610.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-34TARGET OF MONOPTEROS 6