PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca004925G02
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 484aa    MW: 52891.2 Da    PI: 6.1069
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca004925G02genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.75.5e-33254308155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl
  Gh_Sca004925G02 254 KPRMRWTPELHECFVEAVSKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 308
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.456251311IPR017930Myb domain
SuperFamilySSF466898.96E-18252308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-31253309IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25254309IPR006447Myb domain, plants
PfamPF002494.1E-9256307IPR001005SANT/Myb domain
PfamPF143792.1E-20345391IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MKVGISSKTI NHPSFVSVTQ SGPSKGIGES YPNAVSPIHN FPSRDLEGPS WLTGECSSLF  60
PLKKNQLNSG PNSPSSPSSH AKGAFSHSSV FCTSLYLSSS STSETQRQLG NFPFLPHPPT  120
CHQFISAVDS SKSPVVFTED LYNPYDVDHS EVVMKDLLNF PGDACDDGCF HGMHCERDNF  180
ILTEQVELHV LSDELDIAIN DHGENPRVEE IYESPQPSSK PTVGLTCNQN SASATPSMSA  240
AVSPALSGPA AVHKPRMRWT PELHECFVEA VSKLDGPEKA TPKGVLKLMN VEGLTIYHVK  300
SHLQKYRLAK YMPEKKEEKK TWSSGEKKAA LSIGESDGTK NGGTHITEAL QMQIEVQKQL  360
HEQLELQRML QLRIEEQARY LQKILEEQQK AGSALIPTLS LSAPADPPSQ SSELQQPFSP  420
SAVVAASQHS ESKTESSSSS LPSKHKGNGF SVNECKPESS LKRFRFEDKP ESAIDEAVVE  480
NPVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-26254311259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-26254311259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-26254311259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-26254311259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-26254311259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-26254311259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-26254311259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-26254311259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.114050.0boll| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749740.10.0PREDICTED: uncharacterized protein LOC107958474
TrEMBLA0A1U8PF000.0A0A1U8PF00_GOSHI; uncharacterized protein LOC107958474
STRINGGorai.009G120900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.29e-99G2-like family protein