PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G1666 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 432aa MW: 47712.1 Da PI: 4.8891 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.8 | 2e-34 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+++++++sws+++nsfvv++ efa+++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++ weF+++ F +g+k+ l+ i Gh_D13G1666 25 FLSKTFDVVDDPSTDSVVSWSSDNNSFVVWKVPEFARDLLPMYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFLRGQKHALKAIS 112 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Gh_D13G1666 113 RRKP 116 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.1E-37 | 16 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.58E-33 | 20 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.2E-55 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.0E-29 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.6E-19 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.6E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.6E-19 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
METLHGSVPA ACADTAANGN TVTPFLSKTF DVVDDPSTDS VVSWSSDNNS FVVWKVPEFA 60 RDLLPMYFKH NNFSSFVRQL NTYGFKKVDP DRWEFANEGF LRGQKHALKA ISRRKPANVH 120 CNQQQNSSIG ACVDVGKFGL QEEVEGLKRD KNVLMQELVR VRQQQQATDN QLQAYGQRVQ 180 MMEQRQQQMM SFLAKVMQTP GFLNQLLQQQ NECNRQLTGA NKKRRLHRQD EENLTGENGA 240 VSPNGQTVKF QPLLNEHQMM EVNTSPRREH GAPPSSALHS SSSSSEIAEV ILSEVSPASW 300 QSYLQAESGV PDSSLSTAAA QLTTETSVHK SQKDAIFGSV PQMLGFVPDN IVGPESRNAE 360 YLDPMSVVSN ATMPTEADES CAGQDMEIIL DGSPKLPAIN DTFWEHFLTG SPLTGDTDEI 420 YSSSLENGAY GG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-24 | 3 | 114 | 7 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-24 | 3 | 114 | 7 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-24 | 3 | 114 | 7 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067419 | 0.0 | KR067419.1 Gossypium hirsutum HSF38 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314097.1 | 0.0 | heat stress transcription factor A-1b | ||||
Swissprot | O81821 | 1e-134 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A0M3RM33 | 0.0 | A0A0M3RM33_GOSHI; HSF38 | ||||
STRING | Gorai.013G183500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 2e-76 | heat shock factor 3 |
Publications ? help Back to Top | |||
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