PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1666
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 432aa    MW: 47712.1 Da    PI: 4.8891
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1666genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+++++++sws+++nsfvv++  efa+++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g+k+ l+ i 
   Gh_D13G1666  25 FLSKTFDVVDDPSTDSVVSWSSDNNSFVVWKVPEFARDLLPMYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFLRGQKHALKAIS 112
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Gh_D13G1666 113 RRKP 116
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.1E-3716109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-3320114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-5521114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2925114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
METLHGSVPA ACADTAANGN TVTPFLSKTF DVVDDPSTDS VVSWSSDNNS FVVWKVPEFA  60
RDLLPMYFKH NNFSSFVRQL NTYGFKKVDP DRWEFANEGF LRGQKHALKA ISRRKPANVH  120
CNQQQNSSIG ACVDVGKFGL QEEVEGLKRD KNVLMQELVR VRQQQQATDN QLQAYGQRVQ  180
MMEQRQQQMM SFLAKVMQTP GFLNQLLQQQ NECNRQLTGA NKKRRLHRQD EENLTGENGA  240
VSPNGQTVKF QPLLNEHQMM EVNTSPRREH GAPPSSALHS SSSSSEIAEV ILSEVSPASW  300
QSYLQAESGV PDSSLSTAAA QLTTETSVHK SQKDAIFGSV PQMLGFVPDN IVGPESRNAE  360
YLDPMSVVSN ATMPTEADES CAGQDMEIIL DGSPKLPAIN DTFWEHFLTG SPLTGDTDEI  420
YSSSLENGAY GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2431147129Heat shock factor protein 1
5d5v_B3e-2431147129Heat shock factor protein 1
5d5v_D3e-2431147129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674190.0KR067419.1 Gossypium hirsutum HSF38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314097.10.0heat stress transcription factor A-1b
SwissprotO818211e-134HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0M3RM330.0A0A0M3RM33_GOSHI; HSF38
STRINGGorai.013G183500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.22e-76heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  4. Wang J,Sun N,Deng T,Zhang L,Zuo K
    Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum).
    BMC Genomics, 2014. 15: p. 961
    [PMID:25378022]