PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0785
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 399aa    MW: 45085.5 Da    PI: 7.6952
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0785genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-201053245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 + en+  rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k
  Gh_D13G0785 10 KLENTNGRQATYAKRKHGIMKKANELSILCDVEIILLMFSPTNK 53
                 6799*************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.563153IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-25295IPR002100Transcription factor, MADS-box
CDDcd002666.69E-26282No hitNo description
PRINTSPR004043.4E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD VEIILLMFSP TNKPSVCIGK  60
RSSIEEIIEK FAQLTPQERA KRCSQIFQAL KKTFKKLDHD VNIHEFLGSR YMTIFILYIC  120
NCYGQDLTNQ ARLLQARLSE IHRRLSCWTD VDKINNVEHL GQMEDSLKDY LNQIRAHKEN  180
LGKQQLLPIE CTSQFQNEMH VPFRMGIEQQ LQSLAWMPNN DSRHMALPED PNLIPPRDVE  240
CSASSSFGSY SGYFGTPKSS ELSSSGQENG ILNDLQLGGQ CPFFSYDLSI LNDRKFPPVA  300
EMNFPETPVD YHVNGVLAGP RAGYDPNQGS WASTSGPCAV TMFDEPLYTG AAIHITCWHG  360
KGLIGEYSQD KKTLDVLTAS MDKIARNLSR ETSPQLSWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-13196194MEF2C
5f28_B1e-13196194MEF2C
5f28_C1e-13196194MEF2C
5f28_D1e-13196194MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364481e-180HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465871.10.0PREDICTED: MADS-box protein CMB2-like isoform X1
RefseqXP_012465873.10.0PREDICTED: MADS-box protein CMB2-like isoform X1
RefseqXP_016703928.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_016703929.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA41e-107AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A2P5XVE00.0A0A2P5XVE0_GOSBA; Uncharacterized protein
STRINGGorai.013G086600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-98AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]