PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G0720

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 443aa MW: 49055 Da PI: 7.7988

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0720	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.7e-32	276	331	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Gh_D13G0720 276 KQRRCWSSELHKRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 331 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.248	273	333	IPR017930	Myb domain
SuperFamily	SSF46689	6.05E-18	274	334	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-28	274	334	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-27	276	331	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-7	278	329	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MILFILYILL KKNITTNSLD LASLILFGSL YALWSETNPF PSHIFISSTV SENPRCGRNK 60 ITFLSKENFL AMIDMDYAQK MRKCHEYVEA LEEERRKIQV FQRELPLSFE LVTQAIESCK 120 KEMYMQGQSE CSEQTSSDSP VLEEFIPIKR SCNCSEEDDD DDDDDDVAAA DKKKSDWLRS 180 VQLWNPPSKE GVGKTGSGVQ MKGNGGAFQP FHKEKGNVEK KSVEAVGKGN ASATATTTTT 240 SASTTESGSR GIAADDGNTD KKVEKGQQQQ QPPQRKQRRC WSSELHKRFL HALQQLGGSH 300 VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPCPSIN SNGNNPQTPQ FVVVRGIWVP 360 PQEYASVATT AAVSGETSVT PSPNSGVYAP AAVPLPTLAK PLVQRPQRSQ SEDRGSHSEG 420 RVHSNSASTS SSTHTTTDRF LAF

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MILFILYILL KKNITTNSLD LASLILFGSL YALWSETNPF PSHIFISSTV SENPRCGRNK  60
ITFLSKENFL AMIDMDYAQK MRKCHEYVEA LEEERRKIQV FQRELPLSFE LVTQAIESCK  120
KEMYMQGQSE CSEQTSSDSP VLEEFIPIKR SCNCSEEDDD DDDDDDVAAA DKKKSDWLRS  180
VQLWNPPSKE GVGKTGSGVQ MKGNGGAFQP FHKEKGNVEK KSVEAVGKGN ASATATTTTT  240
SASTTESGSR GIAADDGNTD KKVEKGQQQQ QPPQRKQRRC WSSELHKRFL HALQQLGGSH  300
VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPCPSIN SNGNNPQTPQ FVVVRGIWVP  360
PQEYASVATT AAVSGETSVT PSPNSGVYAP AAVPLPTLAK PLVQRPQRSQ SEDRGSHSEG  420
RVHSNSASTS SSTHTTTDRF LAF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9587	0.0	boll\| ovule

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	78329318	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703461.1	0.0	PREDICTED: uncharacterized protein LOC107918412
Swissprot	Q9FPE8	1e-101	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A1U8KLU4	0.0	A0A1U8KLU4_GOSHI; uncharacterized protein LOC107918412
STRING	Gorai.013G080200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	6e-88	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]