PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 380aa    MW: 41558.3 Da    PI: 9.3886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0711genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.7e-15150243354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............................................TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkas..........................................kapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+ s                                           ++++K +Ka+ L ++++++k+L
  Gh_D13G0711 150 KSHSEAERRRRERINNHLAKLRSLLPSTSkvslavvprrreskqrkglsidmikrnqgavpwkflagsstkLTRKPKTDKASLLAEVIQHVKEL 243
                  79*************************888*****************************************9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.367147243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-12150243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-14151175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-12151175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-10153249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-14220249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-12221247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.9E-4279326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCAKKEEYQG DYPRPIHNLQ ASQQHHQLHN DELFGATTGG LVFPQLPWSF PPVHAPSPIQ  60
YFTGNPVQDH VHDSFLVPPP SSSYGGLFTP TAPPAAALQF AYDGAPSVNR LRILSDSFGA  120
VGSAPLGLQA ELGKMTAQEI MDAKAMAASK SHSEAERRRR ERINNHLAKL RSLLPSTSKV  180
SLAVVPRRRE SKQRKGLSID MIKRNQGAVP WKFLAGSSTK LTRKPKTDKA SLLAEVIQHV  240
KELKRQTCLI AETSPVPTET DELTVDTSDQ DGKFVIKASL CCEDRSDLLP DLIKALKDLR  300
LKTLKAEITT LGGRVKNVLF ITGEEQESSC SSDGGDVIGS IQEALKAVME KSTCGDESNS  360
SGNVKRQRTN ISTVLQRRSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.222850.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7514270.0KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706153.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y13e-88BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0D2SAG80.0A0A0D2SAG8_GOSRA; Uncharacterized protein
STRINGGorai.013G079600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]