PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 380aa MW: 41558.3 Da PI: 9.3886 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.5 | 6.7e-15 | 150 | 243 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............................................TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas..........................................kapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ s ++++K +Ka+ L ++++++k+L Gh_D13G0711 150 KSHSEAERRRRERINNHLAKLRSLLPSTSkvslavvprrreskqrkglsidmikrnqgavpwkflagsstkLTRKPKTDKASLLAEVIQHVKEL 243 79*************************888*****************************************9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.367 | 147 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-12 | 150 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-14 | 151 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-12 | 151 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-10 | 153 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-14 | 220 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-12 | 221 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.9E-4 | 279 | 326 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MCAKKEEYQG DYPRPIHNLQ ASQQHHQLHN DELFGATTGG LVFPQLPWSF PPVHAPSPIQ 60 YFTGNPVQDH VHDSFLVPPP SSSYGGLFTP TAPPAAALQF AYDGAPSVNR LRILSDSFGA 120 VGSAPLGLQA ELGKMTAQEI MDAKAMAASK SHSEAERRRR ERINNHLAKL RSLLPSTSKV 180 SLAVVPRRRE SKQRKGLSID MIKRNQGAVP WKFLAGSSTK LTRKPKTDKA SLLAEVIQHV 240 KELKRQTCLI AETSPVPTET DELTVDTSDQ DGKFVIKASL CCEDRSDLLP DLIKALKDLR 300 LKTLKAEITT LGGRVKNVLF ITGEEQESSC SSDGGDVIGS IQEALKAVME KSTCGDESNS 360 SGNVKRQRTN ISTVLQRRSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 160 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22285 | 0.0 | boll |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC751427 | 0.0 | KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016706153.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 3e-88 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A0D2SAG8 | 0.0 | A0A0D2SAG8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G079600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-83 | bHLH family protein |
Publications ? help Back to Top | |||
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