PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0017
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 360aa    MW: 40229.3 Da    PI: 9.9467
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0017genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.6e-1073114445
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                   k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gh_D13G0017  73 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 114
                  6889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-864117No hitNo description
SMARTSM003384.6E-970133IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.41572116IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.0E-774117No hitNo description
PfamPF001705.5E-774114IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
PfamPF141442.4E-31157231IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGHRLNTTKR SCQILYLISW SGELGGSSMA DASPRTDTST DDTDEKNQRF GRGQMNAIVA  60
SDSSDRSKDK TDQKTLRRLA QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ  120
GIFISSSGDQ SHSMSGNGAL AFDVEYARWL EEHNRKINEL RTAVNSHAGD AELRIIVDSV  180
TTHFDDIFRL KGTAAKADVF HILSGMWKTP AERCFLWIGG FRSSELLKLL ANQLEPLTEQ  240
QFMGIQKLQQ SSQQAEDSLS QGMEALQQSL AETLANGSPS APSGSSGNVA NYMGQMAMAM  300
GKLGTLEGFL LQADNLRQQT LQQMHRILTT RQSARALLAI NDYFSRLRAL SSLWLARPRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.90970.0boll| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619726.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0D2V7F40.0A0A0D2V7F4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8M9Y70.0A0A1U8M9Y7_GOSHI; transcription factor HBP-1b(C38)-like
STRINGGorai.007G352600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-133bZIP family protein