PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1536

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 314aa MW: 35134.9 Da PI: 8.4859

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1536	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.4e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Gh_D12G1536 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.9E-5	53	79	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	55	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	56	78	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MLDKTATVSA LPFSSDLLSL TPLDNGKRKR KPPGTPDPEA EVVSLSPQTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLVKSETQ EVVKKKTHKD PRPQVESFIE HQDICSVRGV 120 QHQFQALQYS RLTSSTTPSI DANFSLSPPL PIPKSTGTLE LQLLPSSSTH LWSWRNSDSA 180 SLLKLSIGST EGNGRETAME ATRLKEFASE QLKLAMREKT HAEKAREEAK REIEMAELEF 240 ASAKRIKQQA ENELEKALVL KHQATKKITA TIMQITCQAC RNRFITSMAA VPAADETSLA 300 MSYMSSATTE GEGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	97	KKKTH

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269\|PubMed:24039602}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438389.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	5e-38	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A0D2PW74	0.0	A0A0D2PW74_GOSRA; Uncharacterized protein
STRING	Gorai.008G169500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM693	28	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	2e-40	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]