PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 926aa MW: 104039 Da PI: 9.4845 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.3 | 1e-16 | 200 | 283 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + + l +p+kf++++g+ s + l+ +sg +W +l +k++g +++++GW+ F++ L+ g f+vF+++g+ +f +v +f+ Gh_D12G0646 200 ATIRDKKLGIPRKFVKKYGK--GLSSSVLLTVPSGDTWHAQL--TKSDGVVWFQNGWQAFAEYYSLQYGHFLVFRYEGNGKF--LVLIFD 283 34455669**********84..47778***************..********************************998777..999997 PP | |||||||
2 | B3 | 54.8 | 1.7e-17 | 409 | 507 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+ ++ ps+ + + +++pk+f+ ++ k++ + +ltl +++g++W+ ++ +y r+k + ++ GW++F an+L++gD++vF+l++++e l+v Gh_D12G0646 409 FLVIMQPSYINPGRKMCIPKEFTMKFL-KENLG-DLTLCTSEGKTWSTQYwRYisRNKYTKAIIHIGWRQFMLANNLEAGDVCVFELISQTESMLKVI 504 666788888888899********8884.44454.9***************433777777779999***********************9877767777 PP EE- CS B3 96 vfr 98 ++r Gh_D12G0646 505 IYR 507 766 PP | |||||||
3 | B3 | 56.8 | 4.2e-18 | 571 | 669 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+ v+ p + ++ l +p kf+++h ++ + + +l+ ++gr+W vk+++ ++++ + + W+ F+++n+L++gD++vF+l++r+e +++v+ Gh_D12G0646 571 FKVVMQPRYLILRCSLGIPYKFVKRHLDEE--KEEAILRVSDGRTWVVKFTVkvfTGGQHKA-EFSTWRAFARDNNLEVGDVCVFELINRHENSFKVS 665 4455667777788*************4332..3479**************776543333333.3369*********************9988889*** PP EE-S CS B3 96 vfrk 99 +f++ Gh_D12G0646 666 IFSA 669 9985 PP | |||||||
4 | B3 | 51.7 | 1.6e-16 | 820 | 911 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+ ++ ps+v++ rl +p +f +++ + ++ + + +g++W k+ +++ l +GWk F+k+n+L+ gD++vF+++++++ + Gh_D12G0646 820 FIVAMQPSYVSNGYRLAIPLDFSRKYlrN---GSGNAILSMVGDGKTWLTKYHReaKGT--NprAKLIDGWKTFAKDNNLEIGDVCVFEMINSEGYQ 911 788999********************642...34445666678*********5544333..24588999********************98655443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-26 | 185 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-24 | 187 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-20 | 191 | 283 | No hit | No description |
PROSITE profile | PS50863 | 13.86 | 192 | 285 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-17 | 193 | 285 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 201 | 283 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-22 | 400 | 507 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-20 | 402 | 507 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-22 | 407 | 507 | No hit | No description |
SMART | SM01019 | 3.8E-11 | 409 | 509 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-16 | 409 | 507 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.184 | 409 | 509 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-21 | 562 | 668 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-21 | 564 | 668 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.65E-24 | 569 | 668 | No hit | No description |
SMART | SM01019 | 3.7E-15 | 571 | 670 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.902 | 571 | 670 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-16 | 571 | 669 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-21 | 813 | 908 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-21 | 813 | 921 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-21 | 818 | 920 | No hit | No description |
SMART | SM01019 | 5.2E-14 | 820 | 922 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.579 | 820 | 922 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-15 | 820 | 909 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 926 aa Download sequence Send to blast |
MKVQTYPVVK NASKACGTQG DIVSRVKTRS LVSDAKRSCQ QSARLPSSRE FIDLTDSYIE 60 SLDDSPLDQK TKKKMTSPSF QPCKLRTNPS ESNQAKGIKL EKEKKSLNFQ YLTKEVGGEL 120 KYSVKNDSGR RSSARRRPKP DPVYGKQRAC VGASAFRTSN PSFSVVIQPS YIGSSSALKA 180 NNGSMFASKT PHFFKIILEA TIRDKKLGIP RKFVKKYGKG LSSSVLLTVP SGDTWHAQLT 240 KSDGVVWFQN GWQAFAEYYS LQYGHFLVFR YEGNGKFLVL IFDMSASEIE YPCKSHIEDH 300 NSDDQVCLKL VKKEAKDDTC DGTLYETPPC KETRKKKKKK KRSRPPCSKP PKKLKTTQKD 360 KNEKDWEDES TSEDDMQTKV PRDEHAFGVI EYDKALQRAS SFRSENPFFL VIMQPSYINP 420 GRKMCIPKEF TMKFLKENLG DLTLCTSEGK TWSTQYWRYI SRNKYTKAII HIGWRQFMLA 480 NNLEAGDVCV FELISQTESM LKVIIYRVRQ DTSCSSPLGG INSSENGGNV NSSTLGSTKS 540 NHDCLMRPMT PVEKARAILK ASNFKSKNPF FKVVMQPRYL ILRCSLGIPY KFVKRHLDEE 600 KEEAILRVSD GRTWVVKFTV KVFTGGQHKA EFSTWRAFAR DNNLEVGDVC VFELINRHEN 660 SFKVSIFSAA PGANSSLSPQ ADDAEASQVA SKNCLVPRIE ADDDFGNCYA GNSSPAAQLT 720 TIEYQENEEE ANLTDDAIAS QVASKDWLVP KIEADDDFGK CHVGNSSSAA QFPAIGYQET 780 EEEVQPTIST RPRGPQRLQA GEKAKALQRA SGFKSQNPFF IVAMQPSYVS NGYRLAIPLD 840 FSRKYLRNGS GNAILSMVGD GKTWLTKYHR EAKGTNPRAK LIDGWKTFAK DNNLEIGDVC 900 VFEMINSEGY QLSLNVAIYK PQEDQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-16 | 391 | 914 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-16 | 391 | 914 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 333 | 341 | RKKKKKKKR |
2 | 333 | 354 | RKKKKKKKRSRPPCSKPPKKLK |
3 | 335 | 341 | KKKKKKR |
4 | 339 | 352 | KKRSRPPCSKPPKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616762 | 1e-155 | JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016735007.1 | 0.0 | PREDICTED: B3 domain-containing protein Os03g0620400-like | ||||
TrEMBL | A0A1U8N7B6 | 0.0 | A0A1U8N7B6_GOSHI; B3 domain-containing protein Os03g0620400-like | ||||
STRING | Gorai.008G071300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16925 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-29 | B3 family protein |