PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G0577
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 223aa    MW: 24956.5 Da    PI: 8.316
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G0577genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.4e-08433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+ +++ fC  ++  lC+ C ++ H
  Gh_D12G0577  4 LCDACESAPAIVFCAADEAALCRACDEKVH 33
                 6**************************998 PP
2zf-B_box21.16.7e-075291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ + Ce +++ lC +C +  H g    H
  Gh_D12G0577 52 DVPRCDICENAPAFFDCEIDGSSLCLQCDMVVHVGgkrtH 91
                 5799***************************996655567 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.352147IPR000315B-box-type zinc finger
CDDcd000218.51E-7345No hitNo description
PfamPF006433.6E-6441IPR000315B-box-type zinc finger
SMARTSM003361.8E-7447IPR000315B-box-type zinc finger
SMARTSM003361.3E-85196IPR000315B-box-type zinc finger
CDDcd000212.34E-55484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRILCDACES APAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFDCEI DGSSLCLQCD MVVHVGGKRT HGRNLLLRQR VEFPGDKPAH IDETRRGQNH  120
PRKTPVGEKQ QNHKVSPVHG ADAAAAAVGH LETDTKMIDL NMKPHRIHGQ ASNNQEDGPN  180
NQTLMQVMYG KHYRCGIPIS AYRWAKKLIR IRRSRWSTDD DKW
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016735442.11e-168PREDICTED: B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM56e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1U8N8M81e-166A0A1U8N8M8_GOSHI; B-box zinc finger protein 18-like isoform X1
STRINGGorai.008G064100.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-76DBB family protein