PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3121
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 532aa    MW: 59082.4 Da    PI: 4.3522
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3121genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.21.9e-08155206156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  s y+GV+++  + r++A ++d s++g +k+ + g ++ +e Aa+a++ a++kl+ge
  Gh_D11G3121 155 SIYRGVSRY--TCRYEAFLWDNSDQG-QKS-RTGGYDDEESAARAYDIAALKLWGE 206
                  579***875..69********66655.344.55779999**************997 PP
2AP235.91.9e-112442831355
          AP2  13 grWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++W A+I       k  k ++lg+f+t+eeAa+a++ a+ +l+g
  Gh_D11G3121 244 KKWQARIGKG----KEmKGIYLGTFDTEEEAARAYDVAAIRLKG 283
                  89****9883....347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-14155215No hitNo description
SuperFamilySSF541711.9E-12155215IPR016177DNA-binding domain
SMARTSM003803.5E-13156219IPR001471AP2/ERF domain
PROSITE profilePS5103213.235156213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-11156214IPR001471AP2/ERF domain
PROSITE profilePS5103215.092231291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-16239291IPR001471AP2/ERF domain
SMARTSM003801.1E-15242297IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-13242291IPR016177DNA-binding domain
PfamPF008471.6E-6244283IPR001471AP2/ERF domain
CDDcd000182.13E-18245292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MISPNFDENM DFPLSPIPFP WSPQLVPSLE DVNIAPIDNG GLDNLCLQNN GVSPNMSQPN  60
YGPNGEGNSF GNQIPDPTSV VQNPAELPYN VMQEMMDSLI PLEANGEGET SKEKSKRKPR  120
STSKKQEQGA EDARSNCKRK RQARQEPRTF GETSSIYRGV SRYTCRYEAF LWDNSDQGQK  180
SRTGGYDDEE SAARAYDIAA LKLWGEAAPL NFPISNYEKE LEEMKSYSKS EYLHYLRSRN  240
SDFKKWQARI GKGKEMKGIY LGTFDTEEEA ARAYDVAAIR LKGANAITNF DIFEYDLMNI  300
LQSSKLPIGK GASKLLMKSS MEDVIRKKKN LIGKTSFACF EDDDGSANPE IAQGFNSFGN  360
DMNIDFNGIQ AMEPVGFPMD LSGMDNNSQH QNSSFFPVIN GCQNPVEFQG NSSGIFNGGI  420
SFPGNGDVET DDFQTNFDNF QSLLGLEGQD CFNMNQIEDV VANQDPNNFQ TNPIPVNPSS  480
GCYNGDVSWN GVLQGVPSSL EIENNANGGS MEVINFQTME QPWWKTQSKK MG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6002752e-36JX600275.1 Gossypium hirsutum clone NBRI_GE38041 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434944.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2TS660.0A0A0D2TS66_GOSRA; Uncharacterized protein
STRINGGorai.007G357900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2439834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.15e-60AP2 family protein