PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2607
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 674aa    MW: 76269.7 Da    PI: 6.668
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2607genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.9e-14121179265
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                  W+++evlaL+++r+++e+++ +       We+vs+k+++ gf+rs+ +Ckek+e+ ++++  i 
  Gh_D11G2607 121 WSNDEVLALLRVRSSIENWFPEF-----TWEHVSRKLADLGFKRSADKCKEKFEEESRYFNGIS 179
                  ********************998.....9*******************************8775 PP
2trihelix95.93.8e-30521609186
     trihelix   1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++evlaLi++r ++ ++   +k     k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  Gh_D11G2607 521 RWPRDEVLALINLRCSLYNNGDHEKegtaIKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDINKKR-SLDSRTCPYFHQLS 609
                  8**************9998888653344499*******************************************8.9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071718117174IPR001005SANT/Myb domain
PfamPF138373.2E-9119180No hitNo description
PROSITE profilePS500906.11120172IPR017877Myb-like domain
SuperFamilySSF1014472.88E-6202210No hitNo description
SMARTSM007170.24518584IPR001005SANT/Myb domain
CDDcd122034.38E-25520589No hitNo description
PfamPF138377.4E-19520609No hitNo description
PROSITE profilePS500906.539521582IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MFDGVPDQLH QFIGASSASA RTTTTLLLPL SFTSSNGFTS FDPLFTSSSN SHHQQVPPQL  60
HHHHQQQQQR QFLQSLHQQK NNEESTTSLV GMNMEINGRD QRSIAEPIDN LHHHHHHHHP  120
WSNDEVLALL RVRSSIENWF PEFTWEHVSR KLADLGFKRS ADKCKEKFEE ESRYFNGISC  180
SKNYRIFSEL EELYQAENPP PPPPPPPPPP PPHHHHSQQQ QVAVVADENN KNVEKSREDE  240
DNMGQNLEAD SRNIDELYQT SPANNTAISS DQDNKKVVEN KANYDDNNAA AAANKKKRKR  300
VKKLELFKGF CEDIVNKLMI QQEEMHNKLI EDMVKRDEEK VAREEAWKKQ ELDRINQELE  360
LRAKEQAIAG DRQATIIKFL SKFSQTGSSK KQCFGRVNED VVKVPSECSN PPIASSSPLV  420
AVAENPNPIV TDQNKVDQVS TTSPSSMILA HQNKQSMPIS MTESQAPQNP NPETPDTSSL  480
APQNPNSVSA ESNPLPPTSP LTVNKAPQNP TSNEKEDLGK RWPRDEVLAL INLRCSLYNN  540
GDHEKEGTAI KAPLWERISQ GMLELGYKRS AKRCKEKWEN INKYFRKTKD INKKRSLDSR  600
TCPYFHQLST LYSQGTLIAP SDGPENRSPL AENHPKLPET GKDSSQRGDK DSTVHVSGGN  660
ETNMVQVPGF EFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294302KKKRKRVKK
2295302KKRKRVKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.146810.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642021e-154JX964202.1 Gossypium hirsutum clone NBRI_TRANS-471 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492854.10.0PREDICTED: trihelix transcription factor GTL2 isoform X2
TrEMBLA0A0D2SL930.0A0A0D2SL93_GOSRA; Uncharacterized protein
STRINGGorai.007G283800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-85Trihelix family protein