PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G1795

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 406aa MW: 46321.2 Da PI: 9.0041

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G1795	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.6	1.8e-14	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ie + r t+ kR++ + KKA+E S+LCd+ev++iif + Gh_D11G1795 10 LIEKEKARAATLKKRLQSLKKKAHEFSTLCDVEVCMIIFEP 50 699999********************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.0E-14	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.568	1	48	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.49E-20	2	68	No hit	No description
PRINTS	PR00404	4.8E-8	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-18	3	91	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.5E-16	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-8	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-8	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MARRKLKMKL IEKEKARAAT LKKRLQSLKK KAHEFSTLCD VEVCMIIFEP ELKDSPSRVE 60 VWPSDPVQVE TIIGRYNTMA TSGSQKKTFS ISDFFNMCRR QARDEVAQVC KANFKAKFPT 120 WDDRIDNFSP EHIASCLTKL DSNIEVVKRK IMLMKGDDEQ KLLRSELRTL GGFGARSTLS 180 SSDNYIPAAA LHLWNRSLLD NNIQTHTPLE IVNHFDRIQD IPRKNSEFGV IRDQPPLPAR 240 PLDMQLPSFS PADEALVKLS LSLNPIEKSL RMSMMNDLGF GVRSGIASSS KNSFPNNAMY 300 NPPPSYSICH DPRFGMPSND VMFDSASMPV LHDPRSNGVQ NNVMLKEPKS ALETCFYAPS 360 MRPEVATYNQ QQLMMPHVFS QMPPPEFTDF YHDINQHEMI NKKQRF

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MARRKLKMKL IEKEKARAAT LKKRLQSLKK KAHEFSTLCD VEVCMIIFEP ELKDSPSRVE  60
VWPSDPVQVE TIIGRYNTMA TSGSQKKTFS ISDFFNMCRR QARDEVAQVC KANFKAKFPT  120
WDDRIDNFSP EHIASCLTKL DSNIEVVKRK IMLMKGDDEQ KLLRSELRTL GGFGARSTLS  180
SSDNYIPAAA LHLWNRSLLD NNIQTHTPLE IVNHFDRIQD IPRKNSEFGV IRDQPPLPAR  240
PLDMQLPSFS PADEALVKLS LSLNPIEKSL RMSMMNDLGF GVRSGIASSS KNSFPNNAMY  300
NPPPSYSICH DPRFGMPSND VMFDSASMPV LHDPRSNGVQ NNVMLKEPKS ALETCFYAPS  360
MRPEVATYNQ QQLMMPHVFS QMPPPEFTDF YHDINQHEMI NKKQRF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236447	0.0	HM236447.1 Gossypium hirsutum MADS31 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016694690.1	0.0	PREDICTED: agamous-like MADS-box protein AGL81
TrEMBL	A0A1U8JWS0	0.0	A0A1U8JWS0_GOSHI; agamous-like MADS-box protein AGL81
STRING	Gorai.007G196600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16227	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-19	M-type_MADS family protein