PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G0518 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23468.8 Da PI: 8.0897 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.1 | 7.8e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+ ++ p++q ++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Gh_D11G0518 2 SCNGCRVLRKGCSESCILRSCLqwidnPESQGFATLFVAKFFGRAGLMSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 6*************************99********************************************************************99 PP DUF260 94 lall 97 ++l+ Gh_D11G0518 100 TVLR 103 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.579 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR SCLQWIDNPE SQGFATLFVA KFFGRAGLMS FISAVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PELPAPTESN 120 EASEAAGTAD MWKLQETATS LNSNCRFSSH KRRTIGELKK LQPSDLDLCL TPSFKGNRVL 180 DNRRPGTPSV ISDESVTTAT CSESGFAGQG KLLNLFV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2811 | 1e-107 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016731001.1 | 1e-159 | PREDICTED: LOB domain-containing protein 38-like isoform X1 | ||||
Swissprot | Q9SZE8 | 9e-78 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A1U8MVY6 | 1e-157 | A0A1U8MVY6_GOSHI; LOB domain-containing protein 38-like isoform X1 | ||||
STRING | Gorai.007G056300.1 | 1e-157 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 4e-80 | LOB domain-containing protein 39 |