PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2011
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 637aa    MW: 72759.4 Da    PI: 9.1306
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2011genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12474525154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ +h  +Er+RR+++ + ++ Lr llP+       +K s ++ +  Av YI +L
  Gh_D10G2011 474 KKSMHRVIERQRRQEMANLYASLRNLLPPnY---IRGKRSISDQVDGAVSYIMYL 525
                  6899*************************66...*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.101.1E-8146317IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520471.8E-8157317No hitNo description
CDDcd000831.39E-9471529No hitNo description
SuperFamilySSF474593.4E-13472542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.205473525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-9474525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-10474541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0019479531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MKLRVLKVCI YGQTNFSKRK QLPSNMVLHP EMISKLSRLI ELSIDVDPSD KWWHDSVEEV  60
VKGVCNLEGL RSLCLYLPNY QLLDYTSFIY PSLSCFRFTV GHHKRRTISR VPHEVEAQFT  120
KWDKCLKFVN GENIPFQVRK VLKFTSSFFL DRHENASSLS EFGNENMVML KYCLLVDCNK  180
METIIDGAEV ETVLASLQYL SIHYMKNLRS IWKGPTRSGC MSKLKFLALH TCPKLSYIFS  240
HVLLRNFVNL EEIIVEDCPQ VSSLVSHVPA LPYLKPFLPS LKRLFLLYLP ELVSISNGLS  300
IAPKLERIGF YDCPKLKVLS KRELSSKALK TIKGEKQWWE DIKWNKIDWE NGPRNLMRIF  360
SPINNEKDVM AQLLEDRNVF EAQQSDTTLC TRKSVDIYAQ QKGQWADCMV KSVPSPCSPT  420
LSSLTRPYLP ITPPLNVNLN SWQCCLAVVS GSRGRQQKLL ASGKRENSND DDKKKSMHRV  480
IERQRRQEMA NLYASLRNLL PPNYIRGKRS ISDQVDGAVS YIMYLKNRID GLSGKRDELK  540
KVWGNSSGFH QGMSMSCIEA FPSSAVVRQS LDGVEIVISD SVGAQALTLS KVLQQLLEEG  600
LDVVNCVSSR TDASLIHTIK YEVSDMRGVD PSFCWRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016700360.10.0PREDICTED: disease resistance protein At4g27190-like
TrEMBLA0A1U8KD060.0A0A1U8KD06_GOSHI; disease resistance protein At4g27190-like
STRINGGorai.011G226600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM802034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.13e-34bHLH family protein