PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G1406 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 302aa MW: 33108.5 Da PI: 6.7747 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109 | 2.4e-34 | 39 | 93 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Gh_D10G1406 39 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 93 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-33 | 36 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.095 | 36 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.77E-17 | 38 | 96 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-24 | 39 | 94 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-9 | 41 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.2E-25 | 137 | 183 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MYSAIRSLPL DGRVGDYQGS LDGTNLPGDA CLVLTTDPKP RLRWTAELHE RFVDAVTQLG 60 GPDKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE STDNSKDASC VAESQDTGSS 120 TTSSSRMVAQ DLNDGYQVTE ALRAQMEVQR RLHEQLEVQH RLQLRIEAQS KYLQSMLEKA 180 CKALTDQDQA ASTGLEAARE ELSELAIKVS NDCQGMIPPH DKIKLPSLSE LAVVLENNRT 240 SNMPGRIGDC SVESCLTSSG SPVGSQAGIM KKRPRPLFGN GEPLPLDGNI RQEIEWGMPN 300 IS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-20 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-20 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-20 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-20 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 271 | 275 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.12235 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016699360.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X1 | ||||
Swissprot | Q8LAJ7 | 1e-143 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A1U8KA56 | 0.0 | A0A1U8KA56_GOSHI; myb family transcription factor APL-like isoform X1 | ||||
STRING | Gorai.011G158500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3515 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 1e-132 | G2-like family protein |
Publications ? help Back to Top | |||
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