PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G1262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 221aa MW: 25442.6 Da PI: 6.6309 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.8 | 8.3e-19 | 60 | 143 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ +s+ks+ +g +r + C + +++ + +++ +++ +C a+++++++k+g+w+++k+ +HnH+l+ Gh_D10G1262 60 FYDDYARQVGFLTRVLSSHKSECDGLLFSRGLGCRGYRDGQTKVEL-----QKQDKQQESCSAMIHLRRDKSGRWVIKKFARDHNHPLV 143 9*********************************876666665555.....78888999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-16 | 60 | 143 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSYFGFYLTN LCASVGEHVD DVDGRLEDST VDESNVHDYD TIQEPYVGMI FESEGAAKTF 60 YDDYARQVGF LTRVLSSHKS ECDGLLFSRG LGCRGYRDGQ TKVELQKQDK QQESCSAMIH 120 LRRDKSGRWV IKKFARDHNH PLVIQLGESR RTLDEEKDKK IQELTAELRV KKRLSASYRE 180 QLLAVVKEVE DHNYNLSMKV QRTLDNLKKL DAEAKEILSG R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016677729.1 | 1e-142 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0D2USY3 | 1e-150 | A0A0D2USY3_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.011G142000.1 | 1e-150 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22264 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-55 | FAR1 family protein |