PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 164aa MW: 17696.8 Da PI: 6.1403 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.7 | 1.7e-06 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ + fC ++ lC C ++ Gh_D10G0876 4 LCDGCESAAAVVFCAADEAALCSACDVHMC 33 7************************99755 PP | |||||||
2 | zf-B_box | 25.3 | 3.2e-08 | 50 | 90 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ + ++Ce +++ lC +C ++ H g H Gh_D10G0876 50 DGPRCDICENAPGFFYCEIDGSSLCLQCDMAVHVGgkrtHG 90 5789*****************************66666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.0032 | 1 | 45 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.527 | 1 | 45 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.78E-5 | 3 | 43 | No hit | No description |
SMART | SM00336 | 1.8E-11 | 49 | 94 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.717 | 49 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.6E-6 | 51 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.20E-7 | 52 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MRTLCDGCES AAAVVFCAAD EAALCSACDV HMCNKLASRH VRVGLENSSD GPRCDICENA 60 PGFFYCEIDG SSLCLQCDMA VHVGGKRTHG RSLLLRQRVE FPGEKSGNVE DPASQQVGPN 120 DTKRGQNQIA KTTAGEKQKN HKDFPVEEKD AKADGHHNMG SEMN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ383083 | 4e-41 | FQ383083.1 Vitis vinifera clone SS0ABG32YD22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016700625.1 | 1e-118 | PREDICTED: B-box zinc finger protein 19-like | ||||
Swissprot | C0SVM5 | 1e-59 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1U8KDS4 | 1e-116 | A0A1U8KDS4_GOSHI; B-box zinc finger protein 19-like | ||||
STRING | Gorai.011G099600.1 | 1e-90 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2168 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 4e-49 | DBB family protein |