PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0876
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 164aa    MW: 17696.8 Da    PI: 6.1403
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0876genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  +  fC  ++  lC  C ++  
  Gh_D10G0876  4 LCDGCESAAAVVFCAADEAALCSACDVHMC 33
                 7************************99755 PP
2zf-B_box25.33.2e-085090238
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                 + ++C+ +e+ +  ++Ce +++ lC +C ++ H g    H 
  Gh_D10G0876 50 DGPRCDICENAPGFFYCEIDGSSLCLQCDMAVHVGgkrtHG 90
                 5789*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0032145IPR000315B-box-type zinc finger
PROSITE profilePS501199.527145IPR000315B-box-type zinc finger
CDDcd000214.78E-5343No hitNo description
SMARTSM003361.8E-114994IPR000315B-box-type zinc finger
PROSITE profilePS501198.7174994IPR000315B-box-type zinc finger
PfamPF006438.6E-65190IPR000315B-box-type zinc finger
CDDcd000218.20E-75282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MRTLCDGCES AAAVVFCAAD EAALCSACDV HMCNKLASRH VRVGLENSSD GPRCDICENA  60
PGFFYCEIDG SSLCLQCDMA VHVGGKRTHG RSLLLRQRVE FPGEKSGNVE DPASQQVGPN  120
DTKRGQNQIA KTTAGEKQKN HKDFPVEEKD AKADGHHNMG SEMN
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3830834e-41FQ383083.1 Vitis vinifera clone SS0ABG32YD22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016700625.11e-118PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM51e-59BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1U8KDS41e-116A0A1U8KDS4_GOSHI; B-box zinc finger protein 19-like
STRINGGorai.011G099600.11e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-49DBB family protein