PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 399aa MW: 44483.9 Da PI: 6.07 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.7 | 1.3e-33 | 193 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Gh_D10G0010 193 KPRMRWTPELHERFVEAVNKLHGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 247 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.732 | 190 | 250 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-18 | 191 | 247 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-31 | 193 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-25 | 193 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-10 | 195 | 246 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-22 | 284 | 331 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MAGECSSRLS FPFNSPRSDA KNASSSSSVF CTSLYLSSSS TSETQRQLGN LPFLPHPPTR 60 HQFISSVDSS KSPAMFSEDL NNPYNEGHSE IIMKDFLNLP ADASSDGCFY GMHCESDDFG 120 ITTEQLELQF LSDELDIAIT DHGENPRLDE IYETCPPSSA KPTVELKCNQ NTNSVSPTID 180 GPAMSGAAAA VLKPRMRWTP ELHERFVEAV NKLHGPEKAT PKGVLKLMNV EGLTIYHVKS 240 HLQKYRLAKY MPEKKEERKT SSSSEEKKPA SSTNESDGKK RGGMHITEAL RMQMEVQKQL 300 HEQLELQRSL QLRIEEHARY LQKMLEEQQK AGNALIPNSN SELPSKIASE TEPCESKTES 360 PTSLPSKHKA PNVEDCKLKS SPKRLRMDEA EAKVENPEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-26 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-26 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-26 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-26 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-26 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-26 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-26 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-26 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16559 | 0.0 | ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016717482.1 | 0.0 | PREDICTED: uncharacterized protein LOC107930364 isoform X1 | ||||
Swissprot | Q949U2 | 1e-128 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A1U8LSC9 | 0.0 | A0A1U8LSC9_GOSHI; uncharacterized protein LOC107930364 isoform X1 | ||||
STRING | Gorai.011G001500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6786 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 4e-96 | G2-like family protein |
Publications ? help Back to Top | |||
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