PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2618
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 525aa    MW: 57329.2 Da    PI: 6.1533
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2618genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.9e-28207261155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ +LH++Fv av+qLG  ++A+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Gh_D08G2618 207 KPRVVWSVDLHRKFVAAVNQLGLGDQAVPKKILDLMNVEGLTRENVASHLQKYRL 261
                  79****************************************************8 PP
2Response_reg80.55.7e-27241321109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l k +y +v+++ ++  al++l+ ++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  Ga 
   Gh_D08G2618  24 VLAVDDDPICLKILANLLCKCQY-QVTTTNQAIIALKMLRGNKnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGAC 118
                   799********************.***************655556*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Gh_D08G2618 119 DYLLKPVRIEELKN 132
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.7E-4221145No hitNo description
SuperFamilySSF521729.39E-3521144IPR011006CheY-like superfamily
SMARTSM004481.4E-3022134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.04423138IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2424132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.39E-2725137No hitNo description
Gene3DG3DSA:3.40.50.23005.7E-42181187No hitNo description
Gene3DG3DSA:1.10.10.602.6E-30204266IPR009057Homeodomain-like
PROSITE profilePS5129411.775204264IPR017930Myb domain
SuperFamilySSF466891.79E-18205265IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-25207261IPR006447Myb domain, plants
PfamPF002492.6E-7209260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEEKMGGSNG EDSGEDQFPV GMRVLAVDDD PICLKILANL LCKCQYQVTT TNQAIIALKM  60
LRGNKNRYDL VISDVNMPDM DGFKLLELVG LEMDLPVIML SAHSDTKLVM KGITHGACDY  120
LLKPVRIEEL KNIWQHVVRR KKPDSKDELA APNHDKSRGG TGEAGQTWVA CSSDQKVNKK  180
RKDQSEDEEE ETEDNGHENE DSSSQKKPRV VWSVDLHRKF VAAVNQLGLG DQAVPKKILD  240
LMNVEGLTRE NVASHLQKYR LYLRRLSSVA TQQANMVVAL GSRGPSHLRT GSLDGFGDFR  300
SFTGPRRFSS ASLPSYQSRG TFGRLNSSAA LTLSGISSGV IQPGNSVNGL GKIQPVGTVQ  360
LSNFPPSNEQ LPSNNLQESI PWRNSSPSNS RIALSSMASS AVLGDSRADI LCKAGLNNSY  420
SHVDSRVSAS GSMMDQNNAV SSNTNDVSLF SHLNGEAPFA VRHSEGDKSS SDRFESKPQN  480
GFSQNNFESL EDIMSPVFKL EQNNETAFMD GGFGFDVAYP LGSCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22203267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477357.10.0PREDICTED: two-component response regulator ARR12-like isoform X1
RefseqXP_016728972.10.0PREDICTED: two-component response regulator ORR24-like isoform X1
SwissprotA2X1N21e-129ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-129ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0D2RCC50.0A0A0D2RCC5_GOSRA; Two-component response regulator
TrEMBLA0A1U8MQ720.0A0A1U8MQ72_GOSHI; Two-component response regulator
STRINGGorai.004G291100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-114response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]