PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1913
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 322aa    MW: 33720.8 Da    PI: 8.5044
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1913genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.88.3e-3462160292
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssgkaa 91 
                  ++k+++++++hTkv+gR+RR+R++a+ aar+F+L+ eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++         + s s++++n++++++ 
  Gh_D08G1913  62 TVKRSSTKDRHTKVEGRGRRIRIPATSAARIFQLTHELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkiPTTSGSNASNNKNNNNQI 159
                  789*************************************************************7777733322333332222222222222222222 PP

          TCP  92 k 92 
                   
  Gh_D08G1913 160 D 160
                  2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2767155IPR005333Transcription factor, TCP
PROSITE profilePS5136924.08268122IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDLDDDGGTS DLSTSAGEPN AATDKICESS AFQIKPFKEE PIDSHPPPPI GVVPVSMRPL  60
PTVKRSSTKD RHTKVEGRGR RIRIPATSAA RIFQLTHELG HKSDGETVRW LLEHAEQAII  120
EATGTGTVPA IAVSVGGTLK IPTTSGSNAS NNKNNNNQID DDGGATKKTK LVTQASGLAP  180
VTPQGLVPVW AVGNTGMMIP ANAFWMIPQP TATGAANGRL SNQQPSSPQI WALSPSVFNV  240
AARPISSIVS TSNQSVCNGL STSAVNRSST AVAKKSTMAP SGSSGGGKAQ MLRDFSLEIY  300
DKQELQLIGR SESHQAADAS CF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.207460.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476041.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT892e-55TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A2P5RVT70.0A0A2P5RVT7_GOSBA; Uncharacterized protein
STRINGGorai.004G206900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.24e-56TCP family protein