PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1913

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 322aa MW: 33720.8 Da PI: 8.5044

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1913	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.8	8.3e-34	62	160	2	92
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssgkaa 91 ++k+++++++hTkv+gR+RR+R++a+ aar+F+L+ eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + s s++++n++++++ Gh_D08G1913 62 TVKRSSTKDRHTKVEGRGRRIRIPATSAARIFQLTHELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkiPTTSGSNASNNKNNNNQI 159 789*************************************************************7777733322333332222222222222222222 PP TCP 92 k 92 Gh_D08G1913 160 D 160 2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-27	67	155	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.082	68	122	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDLDDDGGTS DLSTSAGEPN AATDKICESS AFQIKPFKEE PIDSHPPPPI GVVPVSMRPL 60 PTVKRSSTKD RHTKVEGRGR RIRIPATSAA RIFQLTHELG HKSDGETVRW LLEHAEQAII 120 EATGTGTVPA IAVSVGGTLK IPTTSGSNAS NNKNNNNQID DDGGATKKTK LVTQASGLAP 180 VTPQGLVPVW AVGNTGMMIP ANAFWMIPQP TATGAANGRL SNQQPSSPQI WALSPSVFNV 240 AARPISSIVS TSNQSVCNGL STSAVNRSST AVAKKSTMAP SGSSGGGKAQ MLRDFSLEIY 300 DKQELQLIGR SESHQAADAS CF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20746	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476041.1	0.0	PREDICTED: transcription factor TCP19-like
Swissprot	Q9LT89	2e-55	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A2P5RVT7	0.0	A0A2P5RVT7_GOSBA; Uncharacterized protein
STRING	Gorai.004G206900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17337	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-56	TCP family protein