PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G1913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 322aa MW: 33720.8 Da PI: 8.5044 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.8 | 8.3e-34 | 62 | 160 | 2 | 92 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssgkaa 91 ++k+++++++hTkv+gR+RR+R++a+ aar+F+L+ eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + s s++++n++++++ Gh_D08G1913 62 TVKRSSTKDRHTKVEGRGRRIRIPATSAARIFQLTHELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkiPTTSGSNASNNKNNNNQI 159 789*************************************************************7777733322333332222222222222222222 PP TCP 92 k 92 Gh_D08G1913 160 D 160 2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-27 | 67 | 155 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.082 | 68 | 122 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDLDDDGGTS DLSTSAGEPN AATDKICESS AFQIKPFKEE PIDSHPPPPI GVVPVSMRPL 60 PTVKRSSTKD RHTKVEGRGR RIRIPATSAA RIFQLTHELG HKSDGETVRW LLEHAEQAII 120 EATGTGTVPA IAVSVGGTLK IPTTSGSNAS NNKNNNNQID DDGGATKKTK LVTQASGLAP 180 VTPQGLVPVW AVGNTGMMIP ANAFWMIPQP TATGAANGRL SNQQPSSPQI WALSPSVFNV 240 AARPISSIVS TSNQSVCNGL STSAVNRSST AVAKKSTMAP SGSSGGGKAQ MLRDFSLEIY 300 DKQELQLIGR SESHQAADAS CF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20746 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476041.1 | 0.0 | PREDICTED: transcription factor TCP19-like | ||||
Swissprot | Q9LT89 | 2e-55 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A2P5RVT7 | 0.0 | A0A2P5RVT7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G206900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17337 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 4e-56 | TCP family protein |