PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1721

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 338aa MW: 38386.6 Da PI: 5.6848

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1721	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.7	5.5e-50	6	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ Gh_D08G1721 6 LPPGFRFHPTDEELVGYYLKRKTQGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC-- 100 79**************************.99**********95334445667*********************************9.. PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g +ktLvfy+grap g + dWvmhe rl Gh_D08G1721 101 QSATGYRKTLVFYRGRAPLGDRMDWVMHECRL 132 6789***********************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-55	5	154	IPR003441	NAC domain
PROSITE profile	PS51005	56.074	6	154	IPR003441	NAC domain
Pfam	PF02365	4.7E-27	7	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MEGGSLPPGF RFHPTDEELV GYYLKRKTQG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60 DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSATGYRKTL VFYRGRAPLG 120 DRMDWVMHEC RLSDEPSQGS NNQGAFALCR VVKRNEPRAS DAHGKPKAMR VGNRSSNAEL 180 TSPMVSNEPL SNSGDISCQT SYPNNESRYS SPITSPYPYE VTQVPPFEPA SVATDPTSIW 240 VSPELILDSS KDYPQISETA AQYFPQYEFP SSLTRWQQYE QREFSPSSSH SNFGEIEHVD 300 GLGHIGCMPP YSEHANYMDF YGNEGNDQTG SFNCPNPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-50	5	155	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-50	5	155	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-50	5	155	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-50	5	155	16	166	NO APICAL MERISTEM PROTEIN
4dul_A	8e-50	5	155	16	166	NAC domain-containing protein 19
4dul_B	8e-50	5	155	16	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721257.1	0.0	PREDICTED: NAC domain-containing protein 86-like isoform X1
Swissprot	O49697	1e-105	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A1U8M388	0.0	A0A1U8M388_GOSHI; NAC domain-containing protein 86-like isoform X1
STRING	Gorai.004G186700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-108	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]