PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1459
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 703aa    MW: 78930.1 Da    PI: 5.3374
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1459genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822144.21.1e-44772191135
       DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas....aspess 93 
                  gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+    +  +ag  +s    +s++ +
  Gh_D08G1459  77 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQSSpAAGTSAGMTSSssqmVSQQIP 174
                  6899*****************************************************************95444443344444433330122333333 PP

       DUF822  94 lq...sslkssalaspvesysaspksssfpspssldsislasaas 135
                       ++ +ss  ++ ve  ++++k + +p ps +d  s+a a+s
  Gh_D08G1459 175 PPpatLQGVSSGYRTTVEYNACRMKGVFMPTPSPYDLSSTAPAQS 219
                  2221234569999**********************9988765444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.3E-3879214IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.47E-183260700IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.7E-202263698IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.3E-104269689IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-69300314IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-69321339IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-69343364IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060347355IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008425.7E-8426435IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.9E-69436458IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-69509528IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-69543559IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-69560571IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-69578601IPR001554Glycoside hydrolase, family 14
PRINTSPR008425.7E-8581591IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.9E-69618640IPR001554Glycoside hydrolase, family 14
PRINTSPR008425.7E-8669683IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008425.7E-8684698IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MATSMQKLVG VSQEDDEEEM EMDVKEEDDE DEENGEKQIA AQMMIGVDEV MPSTSSSDQF  60
QYQPQLQEQV SNQSGGGGAR RSRPLEEKER TKLRERHRRA ITARILAGLR RHGNYNLRVR  120
ADINDVIAAL AREAGWVVLP DGTTFPSRSQ SSPAAGTSAG MTSSSSQMVS QQIPPPPATL  180
QGVSSGYRTT VEYNACRMKG VFMPTPSPYD LSSTAPAQSL GVVADGGEQT ERLPLIAGST  240
QVINDKQIIG LPTKLPERDF AGTPYVPVYV MLPLGVINMK CELADPDGLL KQLRVLKSIN  300
VDGVMVDCWW GIVEAHAPQE YNWNGYQRLF QMVRELKLKL QVVMSFHECG GNVGDDVCIP  360
LPHWVAEIGR SNPEIFFTDR EGRRNPECLS WGIDKERVLR GRTAVEVYFD YMRSFRVEFD  420
EFFEDGIISM VEVGLGPCGE LRYPSCPVKH GWRYPGIGEF QCYDQYMLKS LRKAAEMRGH  480
SFWARGPDNA GSYNSQPHET GFFCDGGDYD GYYGRFFLNW YSQVLLNHGD RVLSLAKLAF  540
DGTCITAKLP GIHWWYKAAS HAAELTAGYY NPCNRDGYTA IATMLQKHGA ALSFSCAEHH  600
ILEQQDHLRE ALADPRGLVW QVLNAAWDVS IPIASENAFL CHDRVGYNTI LDNVKPVNDP  660
DGRHFSSFTY HRLSPLLMER QNFMEFERFV KRMHGEAVLD PQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdr_A1e-15326569611444Beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016682127.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_016682128.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_016682129.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_016682131.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_016682132.10.0PREDICTED: beta-amylase 7-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1U8J1M50.0A0A1U8J1M5_GOSHI; Beta-amylase
STRINGGorai.004G158600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]