PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1138
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 555aa    MW: 61779.7 Da    PI: 5.3158
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1138genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-5191371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp GfrF+Ptdeel+++yL++k++gk++++ evi+e+d++k+ePwdLp+  ++++++ ew+fF++ d+ky++g+r nrat++gyWkatgkd++++s +
  Gh_D08G1138   9 LPIGFRFRPTDEELIHFYLRAKINGKRNDEVEVIREIDVCKCEPWDLPHmsAIETRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKDRKIKS-G 105
                  699************************9999*****************4346777888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++l+g+kk+Lvfy+grap+g++t+ vmheyr 
  Gh_D08G1138 106 SSLIGMKKSLVFYTGRAPRGKRTNCVMHEYRT 137
                  9*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-554160IPR003441NAC domain
PROSITE profilePS5100553.8599160IPR003441NAC domain
PfamPF023651.8E-2410136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MAVLSLNSLP IGFRFRPTDE ELIHFYLRAK INGKRNDEVE VIREIDVCKC EPWDLPHMSA  60
IETRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSSLIG MKKSLVFYTG  120
RAPRGKRTNC VMHEYRTTLI ELDGTKPGQN PFVICRLFKK QDESIEDTNG DEVDVSSPTE  180
DMQSELEGPQ DSPALEGVAQ PKFPHNNGTC SGGLPNEVVS NAVPPMLECN IVDSKAYSVT  240
GQVAEIVTDK VDQVGEALNH FYDPMVEPPD YKFFSPLRSQ VEAEQAPWMF HQVGSSLSAV  300
EFEHETNQND ASISDFLNSI LNNSDDYYSV DSSSQQYSAN ESETPKTMAV VEDGRIRSEQ  360
DAEVAQVLMI GSQLGREIAD KGTPLEIKAT AQDCTIPINK DIVLNSKEEP SNHVTTTCNL  420
DNAITGIRIR PHAAQSQPNI KNSVTQGYAP RRIRLQCKLQ VGTYYSEGKK DGSKPVVTKD  480
VKVMEENIAS GSDAACGTMD IPHEISLSES SKKGFLKSKT IVSARCSKQF STSRWHKQFA  540
VMFQVAVMLL LLLVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-43816314171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692293.10.0PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A1U8JU510.0A0A1U8JU51_GOSHI; NAC domain-containing protein 62-like
STRINGGorai.004G125900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-90NAC transcription factor-like 9