PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G2371

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 521aa MW: 58399.5 Da PI: 8.7975

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G2371	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	344	388	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f Lr+llP+ +K +Ka++L+ A eY+ sL Gh_D07G2371 344 HMMSERKRREKLNESFVALRSLLPSG-----TKRDKASVLTTAREYLVSL 388 8899*******************8.....8************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	338	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.11	339	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.08E-11	339	392	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.5E-14	343	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	344	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-12	345	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MDAVFNLDEA SRAEFLHLLM QSTGCSYICL WSYSFLQQAN CLIGLDGCCN EENSQALGLF 60 LEYKQLILRL ENDNGLVPGF AFKNNQPYIE LRELELQNRA FHETQRQFYR VIKIKCKFYI 120 TKELTTAAFM ACRSGEIELG SSSVVQLNME MEMRSFFSED QLPESTDQNR PSSSSSSLRS 180 LSTSSPDSSL IFTVPTTHEP APSSLQQATI TPSSINDPRR AMQAFSQTGS NIPLPTLESE 240 NAAMTRAILA VLTSPSSSSS SSSTPFYRNQ SLPYNNYRLN PKASAFKRYA TGLGAGPATT 300 PARASLRAQA MMKRAILFYR KFNLARREQL LRSRPGPTSN QLHHMMSERK RREKLNESFV 360 ALRSLLPSGT KRDKASVLTT AREYLVSLKA QIMELNRQKQ LLEAPILPSK EGAAAIEVND 420 PSNERVNVRV IPVPESTSEE RLADLRVTIR GERPIVDILI HLLEFLKLDR KVSLMSIEAN 480 TGVSEFGSVN LVSLRLRIQG DGWDESTFQE AVRRLITDLA Q

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MDAVFNLDEA SRAEFLHLLM QSTGCSYICL WSYSFLQQAN CLIGLDGCCN EENSQALGLF  60
LEYKQLILRL ENDNGLVPGF AFKNNQPYIE LRELELQNRA FHETQRQFYR VIKIKCKFYI  120
TKELTTAAFM ACRSGEIELG SSSVVQLNME MEMRSFFSED QLPESTDQNR PSSSSSSLRS  180
LSTSSPDSSL IFTVPTTHEP APSSLQQATI TPSSINDPRR AMQAFSQTGS NIPLPTLESE  240
NAAMTRAILA VLTSPSSSSS SSSTPFYRNQ SLPYNNYRLN PKASAFKRYA TGLGAGPATT  300
PARASLRAQA MMKRAILFYR KFNLARREQL LRSRPGPTSN QLHHMMSERK RREKLNESFV  360
ALRSLLPSGT KRDKASVLTT AREYLVSLKA QIMELNRQKQ LLEAPILPSK EGAAAIEVND  420
PSNERVNVRV IPVPESTSEE RLADLRVTIR GERPIVDILI HLLEFLKLDR KVSLMSIEAN  480
TGVSEFGSVN LVSLRLRIQG DGWDESTFQE AVRRLITDLA Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	ERKRRE
2	348	353	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016719707.1	0.0	PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBL	A0A1U8LYU2	0.0	A0A1U8LYU2_GOSHI; putative transcription factor bHLH041 isoform X1
STRING	Gorai.001G012400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-59	bHLH family protein